PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G079200.1

Common Name

B456_005G079200, LOC105797036

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 448aa MW: 51351 Da PI: 6.363

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G079200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.7	2.1e-25	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li+a+++++e+ g+ +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ Gorai.005G079200.1 121 KWTDKMVRLLITAVSYIGEDAAGGCgggmrrkfaviQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENP 211 7*******************998899999999**********************************************569999888 PP trihelix 80 pyfdql 85 +++d + Gorai.005G079200.1 212 ALLDVI 217 887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.3E-23	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEGNLSQGGM IPGGGSFGGL DLQGSMRVHN HAQNPHSIHQ HHHPNPRQGA SLHASIHEDF 60 PLKMGNIQNS DQIISLMDYN KGERGKSSVS DEDEPSFTEE GIDGHNDGSK GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED AAGGCGGGMR RKFAVIQKKG KWKSVSKVMA ERSYHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPQLQ RSLQLAFRIK DDQEKDDAKR HRHDDNDDDD DDDMETDDHD 300 DFEENHASHG DDRGIYRVLG GSAKRSRQVQ VHEDACFHNS SNSQDCNKNS FPYPPPAQAD 360 INQAPPENPR AAWLQKQWIE SCSLQLEEQK LQIQVEMLEL EKQRFKWQRF SKKRDRELEK 420 MRMENERMKL ENERMALELK QKELDAD*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEGNLSQGGM IPGGGSFGGL DLQGSMRVHN HAQNPHSIHQ HHHPNPRQGA SLHASIHEDF  60
PLKMGNIQNS DQIISLMDYN KGERGKSSVS DEDEPSFTEE GIDGHNDGSK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED AAGGCGGGMR RKFAVIQKKG KWKSVSKVMA ERSYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPQLQ RSLQLAFRIK DDQEKDDAKR HRHDDNDDDD DDDMETDDHD  300
DFEENHASHG DDRGIYRVLG GSAKRSRQVQ VHEDACFHNS SNSQDCNKNS FPYPPPAQAD  360
INQAPPENPR AAWLQKQWIE SCSLQLEEQK LQIQVEMLEL EKQRFKWQRF SKKRDRELEK  420
MRMENERMKL ENERMALELK QKELDAD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482417.1	0.0	PREDICTED: uncharacterized protein LOC105797036
TrEMBL	A0A0D2RHC7	0.0	A0A0D2RHC7_GOSRA; Uncharacterized protein
STRING	Gorai.005G079200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-172	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.005G079200.1
Entrez Gene	105797036

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]