PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G075100.1

Common Name

B456_005G075100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 457aa MW: 52194.7 Da PI: 7.6023

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G075100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	287.7	3.2e-88	82	454	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++ Ll +A+ v++++++ a + L +l +++ gd++qR++a+f+ +L ar++ s y+ + ++t+ ++++ a++ ++ vsP++ Gorai.005G075100.1 82 LIHSLLIIATSVDKNNMNSALENLIQLYPTVTLMGDSVQRVVAHFADGLFARILTPKSPFYDMVMKEPTT----EQQFLAFTSLYRVSPYY 168 6899*************************************************9999988777776....677788899****** PP GRAS 92 kfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee.lgvp 175 +f+h+taNqaI ea+e++ +++H+iDf++s+G+QWp+L+q+L++ +++ slR+Tg g+ s eel+et+ rL +fA+ +++ Gorai.005G075100.1 169 QFAHFTANQAIIEAFEKDqetnnnRALHVIDFNVSYGFQWPSLIQSLSQ-SGKRVSLRLTGYGR----SLEELQETEARLVSFAKGfCNLV 254 ***********998667776788****************98.78899*****....9***********97369 PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 fef+ l ++ ++l +++ r k++E++aVnlv++l +++ + +++Lk v sl+P +v++veqe + +Fl rf+e+l+y++a Gorai.005G075100.1 255 FEFQGL-LRSSSKLIINQ-REKKNETVAVNLVFHLSNFM----E----MSQTLKSVHSLKPSIVILVEQEGNPRVRNFLSRFMESLHYFAA 335 ***6.66666664555.7899***********9....3....4569*********************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg......... 348 +fdsl+ lp+es er ++Er lg+ei+ ++ e+ + +e++++W++++e+ GF+ ++ls+k qaklll+ + Gorai.005G075100.1 336 MFDSLDDCLPQESTERLSIERNHLGKEIKAMINSENLD----EENKGTWKNMMERHGFGGMKLSSKCLIQAKLLLKVRTHNYcplpcegen 422 *********************************9....8999*************************8654332111111111 PP GRAS 349 ....yrveee.sgslv.lgWkdrpLvsvSaWr 374 +rv ++ +g ++ lgW+dr L+++SaW+ Gorai.005G075100.1 423 tnggFRVFQRdEGKALsLGWQDRCLLTASAWQ 454 11126654334555555************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.339	56	419	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-85	82	454	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MEDRDEEEEH LNLSLAIVTD PNGENSRKRK RKLLNICNPL NPSHEGYFEG KIFKLLQVRE 60 EMLKLDHKRS KGLAENGKGL HLIHSLLIIA TSVDKNNMNS ALENLIQLYP TVTLMGDSVQ 120 RVVAHFADGL FARILTPKSP FYDMVMKEPT TEQQFLAFTS LYRVSPYYQF AHFTANQAII 180 EAFEKDQETN NNRALHVIDF NVSYGFQWPS LIQSLSQSGK RVSLRLTGYG RSLEELQETE 240 ARLVSFAKGF CNLVFEFQGL LRSSSKLIIN QREKKNETVA VNLVFHLSNF MEMSQTLKSV 300 HSLKPSIVIL VEQEGNPRVR NFLSRFMESL HYFAAMFDSL DDCLPQESTE RLSIERNHLG 360 KEIKAMINSE NLDEENKGTW KNMMERHGFG GMKLSSKCLI QAKLLLKVRT HNYCPLPCEG 420 ENTNGGFRVF QRDEGKALSL GWQDRCLLTA SAWQCV*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MEDRDEEEEH LNLSLAIVTD PNGENSRKRK RKLLNICNPL NPSHEGYFEG KIFKLLQVRE  60
EMLKLDHKRS KGLAENGKGL HLIHSLLIIA TSVDKNNMNS ALENLIQLYP TVTLMGDSVQ  120
RVVAHFADGL FARILTPKSP FYDMVMKEPT TEQQFLAFTS LYRVSPYYQF AHFTANQAII  180
EAFEKDQETN NNRALHVIDF NVSYGFQWPS LIQSLSQSGK RVSLRLTGYG RSLEELQETE  240
ARLVSFAKGF CNLVFEFQGL LRSSSKLIIN QREKKNETVA VNLVFHLSNF MEMSQTLKSV  300
HSLKPSIVIL VEQEGNPRVR NFLSRFMESL HYFAAMFDSL DDCLPQESTE RLSIERNHLG  360
KEIKAMINSE NLDEENKGTW KNMMERHGFG GMKLSSKCLI QAKLLLKVRT HNYCPLPCEG  420
ENTNGGFRVF QRDEGKALSL GWQDRCLLTA SAWQCV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-51	90	453	27	378	Protein SCARECROW
5b3h_A	1e-51	90	453	26	377	Protein SCARECROW
5b3h_D	1e-51	90	453	26	377	Protein SCARECROW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	RKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482346.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A0D2RH06	0.0	A0A0D2RH06_GOSRA; Uncharacterized protein
STRING	Gorai.005G075100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15761	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-53	RGA-like 2

Link Out ? help Back to Top
Phytozome	Gorai.005G075100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]