PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G054900.1
Common NameB456_005G054900, LOC105796080
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 280aa    MW: 32453.6 Da    PI: 9.2896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G054900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.15.4e-202168148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  Gorai.005G054900.1 21 KGPWTAEEDKLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68
                        79********************************************97 PP
2Myb_DNA-binding52.41.2e-1674118147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Gorai.005G054900.1  74 RGQITPHEESIIIELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6341672IPR017930Myb domain
SuperFamilySSF466897.49E-3118115IPR009057Homeodomain-like
SMARTSM007172.7E-172070IPR001005SANT/Myb domain
PfamPF002492.1E-182168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-242275IPR009057Homeodomain-like
CDDcd001671.20E-122368No hitNo description
PROSITE profilePS5129418.37473123IPR017930Myb domain
SMARTSM007179.1E-1573121IPR001005SANT/Myb domain
PfamPF002497.6E-1474118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2476122IPR009057Homeodomain-like
CDDcd001672.99E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSWAMMAGHL GWGFIEEGWR KGPWTAEEDK LLIEYVKLHG EGRWNSVARL AGLKRNGKSC  60
RLRWVNYLRP DLKRGQITPH EESIIIELHA RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK  120
KKNKLPSDNN TSDHKSKARL LKRQQFQQQQ LLQQQQQQLQ LQQQQEQHEQ QLQLNQLDMK  180
RIMSLLDETE HKSSVLPYVP QLRQEMATAV PYPNTTVEQQ QAGLFYPMME FDGNVSGSGS  240
DTSNEVDVLW DGLWNLDDIN GNFGATSKVS FHNLATPFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-272112227127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149813e-67JX614981.1 Gossypium hirsutum clone NBRI_GE58733 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481171.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A0D2SBE70.0A0A0D2SBE7_GOSRA; Uncharacterized protein
STRINGGorai.005G054900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-84myb domain protein 305
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]