PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.005G016700.4 | ||||||||
Common Name | B456_005G016700, LOC105796387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28046.8 Da PI: 7.6398 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90.7 | 2e-28 | 88 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Gorai.005G016700.4 88 FYNAYATRVGFIIRVSKLSRSRHDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 175 ******************************************9988..99*************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-25 | 88 | 175 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MLVLAVEFWV HGDVNGGIML NPVQAEASSS MDNDNETGEN PVEGIFQPGL NEKLDRTSPQ 60 RDDIPEIVLA DEPYVGQEFE SEASAHAFYN AYATRVGFII RVSKLSRSRH DGSAIGRALV 120 CNKEGFRMPD KREKIMRHRA ETRVGCRAMI LVRKVSSGKW VVTKFVKEHT HPLTPGKGRT 180 DCIYDQYPNE HDKIRELTHQ LAIEKKRSAT YKRQLELIFE QIDECNKSLS KKIQHIVDSV 240 REIENK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX579447 | 1e-123 | JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481543.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
TrEMBL | A0A0D2N6T0 | 0.0 | A0A0D2N6T0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G016700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-105 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.005G016700.4 |
Entrez Gene | 105796387 |
Publications ? help Back to Top | |||
---|---|---|---|
|