PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G016700.3

Common Name

B456_005G016700, LOC105796387

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 242aa MW: 27551.2 Da PI: 7.6398

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G016700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.7	1.9e-28	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Gorai.005G016700.3 83 FYNAYATRVGFIIRVSKLSRSRHDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 170 ****************************************9988..99***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-25	83	170	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEFWVHGDVN GGIMLNPVQA EASSSMDNDN ETGENPVEGI FQPGLNEKLD RTSPQRDDIP 60 EIVLADEPYV GQEFESEASA HAFYNAYATR VGFIIRVSKL SRSRHDGSAI GRALVCNKEG 120 FRMPDKREKI MRHRAETRVG CRAMILVRKV SSGKWVVTKF VKEHTHPLTP GKGRTDCIYD 180 QYPNEHDKIR ELTHQLAIEK KRSATYKRQL ELIFEQIDEC NKSLSKKIQH IVDSVREIEN 240 K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX579447	1e-123	JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481544.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X3
TrEMBL	A0A0D2S9M2	0.0	A0A0D2S9M2_GOSRA; Uncharacterized protein
STRING	Gorai.005G016700.1	1e-180	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-105	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G016700.3
Entrez Gene	105796387

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]