PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G016700.1 | ||||||||
Common Name | B456_005G016700, LOC105796387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 266aa MW: 30620.8 Da PI: 7.2826 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90.5 | 2.3e-28 | 107 | 194 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Gorai.005G016700.1 107 FYNAYATRVGFIIRVSKLSRSRHDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 194 ******************************************9988..99*************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-25 | 107 | 194 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MRESLNFEFL LGYIYIYIYI YFFTVEFWVH GDVNGGIMLN PVQAEASSSM DNDNETGENP 60 VEGIFQPGLN EKLDRTSPQR DDIPEIVLAD EPYVGQEFES EASAHAFYNA YATRVGFIIR 120 VSKLSRSRHD GSAIGRALVC NKEGFRMPDK REKIMRHRAE TRVGCRAMIL VRKVSSGKWV 180 VTKFVKEHTH PLTPGKGRTD CIYDQYPNEH DKIRELTHQL AIEKKRSATY KRQLELIFEQ 240 IDECNKSLSK KIQHIVDSVR EIENK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX579447 | 1e-123 | JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481542.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X1 | ||||
TrEMBL | A0A0D2RE30 | 0.0 | A0A0D2RE30_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G016700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-105 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G016700.1 |
Entrez Gene | 105796387 |
Publications ? help Back to Top | |||
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