PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G015100.1

Common Name

B456_005G015100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 1289aa MW: 148526 Da PI: 6.1688

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G015100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	93.5	3.3e-29	14	369	3	374
GRAS 3 elLlecAeavss.gdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 +lLl+cAea+++ gdl+ a+a+L ++ la + + ++++yf+ ALa+r ++ l+p + +++++ ++ P Gorai.005G015100.1 14 RLLLSCAEAIEEyGDLKSADAFLHNILILADQIPnwfQDEIKVVKYFADALARRAYG--------LHPAS----------SFFTFPVDPLP 86 79*******989******99888544431146788************9........22222..........2344457889 PP GRAS 90 ilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 ++ N I + v+g+ +r+H+iDf+i + + l++L + +++p +R+ +p +++ + ++ e L+k Aee++v++ Gorai.005G015100.1 87 YYHYNSYHINGVIKKVVDGAlmgsRRLHVIDFSIPYYRFQNSVLRTLPNFSGDPLPVRVSYTLPPFLKKHVKFSRQMEILTKDAEEVNVKL 177 ***********999998888879*******9999********************9999999999************9 PP GRAS 177 e..fnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 e +v++ ++l++++ e+++k+ +E+++V ++l +l++e ++e L +k+++P++v++ + ++h++++Fl+ f ++++ Gorai.005G015100.1 178 EneLKVVYGNSLAEVDECEIDFKRrrdDEMVVVYYKFKLDKLVREAKAMER----ELARLKEINPTIVIMLDFYSNHSDSNFLTCFKDSFQ 264 7225667888********99999************99999988....9******************************* PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 y + +d +++ ++ +E e g+e +n a eg++ + rh +l +W++ +++aGF+ +pl+++ + ++ + ++ Gorai.005G015100.1 265 YSLKTLDYWAEL-------DHYLEGE-YGWE-CNREAGEGNNIIRRHPSLTEWQHLFSMAGFSRIPLNHRKDNLSFEDNPSFAdNSLLEIM 346 *****877.......7888888.5666.677899*************************999887777777777733334444 PP GRAS 353 .eesgslvlgWkdrpLvsvSaWr 374 ee+++l+lg k+rp++++SaW+ Gorai.005G015100.1 347 gEEEECLILGYKQRPMFFLSAWK 369 799*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.741	1	347	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-26	14	369	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	9.308	637	691	IPR003656	Zinc finger, BED-type
SMART	SM00614	2.3E-12	637	687	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.79E-5	640	689	No hit	No description
Pfam	PF02892	6.7E-5	640	680	IPR003656	Zinc finger, BED-type
SuperFamily	SSF53098	2.65E-39	757	1186	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	1.8E-12	965	1056	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	4.9E-18	1107	1185	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1289 aa Download sequence Send to blast
MASFFDIDTD TALRLLLSCA EAIEEYGDLK SADAFLHNIL ILADQIPNWF QDEIKVVKYF 60 ADALARRAYG LHPASSFFTF PVDPLPYYHY NSYHINGVIK KVVDGALMGS RRLHVIDFSI 120 PYYRFQNSVL RTLPNFSGDP LPVRVSYTLP PFLKKHVKFS RQMEILTKDA EEVNVKLENE 180 LKVVYGNSLA EVDECEIDFK RRRDDEMVVV YYKFKLDKLV REAKAMEREL ARLKEINPTI 240 VIMLDFYSNH SDSNFLTCFK DSFQYSLKTL DYWAELDHYL EGEYGWECNR EAGEGNNIIR 300 RHPSLTEWQH LFSMAGFSRI PLNHRKDNLS FEDNPSFADN SLLEIMGEEE ECLILGYKQR 360 PMFFLSAWKP KVEDGHFDSN STNHKFGQGF NPNPLPRQPL QPFPEGLKLN RLAALAEIHD 420 ISKYLSCKYK LSLTLTLASK VNNMNETILD PNKKQVFFIQ DNYCYTKDMT SYYFMLDSKD 480 KISGRPLIIE KAFESRDGYH FEPSLSKVED YRDSTLQGYN IDVAVAICLQ NRHTSDEVYI 540 VALYWPPTES EISKSLTLHI FDDLKHMKTT FVTVKVQGPE FKFQEECISS TPTSSNTAMP 600 LEIAENAHIE QVVADPFNTL EGPYNKIVET KRNKQRKSWS KVWVDFDKFE EHGKQVAKCK 660 HCLKVFTGSS KSGTTHLNNH SKVCPGKKKQ NQESQLILPV DTNERSSTFD QETSHLDLVK 720 MVIRHQYPLD LAGQEAFKNF VKGLQPMYEF QSRDKFLWKN NHGKTAYCCL IAHFIDDGWE 780 LKIKILGLRK LEHVYDTKVV GGIIGSFVSE WNISKKVCSI TVDNSFLNDG MVHQIRENCV 840 SEQGSLSTAH WFISFTLLED GFREMDTILS KLWKSIEYVT ETTHGKLNFQ EAVNQVKLQG 900 GKSWDELSFK LESDSDILDS ALRSREIFCK LEQIDDNFML NLSKEEWDKV VTLQSCFKCF 960 DDIKGTQSLT ANLYFPKLCN MYEEFGQLKK SNHPFVILMK RKFDNYWSLC NVAFTIAAAL 1020 DPRLKFRFTC NETYDLESMM KLKRFRKVLM DVYFDYANEA KNLSASSSVL DDSNSLTAET 1080 TKDCIVSYFS KFVSASNVKE VASQKSELDC YLEETLLPSD ADILGWWRIN SQRFPTLAKM 1140 ARDFLAIPVS VSSPCSNVSA MTINPAYSSL DPESMEALVC SQNWLESTKE NDGEHHEPMQ 1200 NMDKRKRKME ENDTSTVKVF KNRTHEKASS NGDIASDFNK NDGSLSFDNW MEPQCSSSES 1260 VGERAEIVDE KTRRKKFCYF STALVYRL*

Sequence ? help Back to Top

Protein Sequence Length: 1289 aa Download sequence Send to blast

MASFFDIDTD TALRLLLSCA EAIEEYGDLK SADAFLHNIL ILADQIPNWF QDEIKVVKYF  60
ADALARRAYG LHPASSFFTF PVDPLPYYHY NSYHINGVIK KVVDGALMGS RRLHVIDFSI  120
PYYRFQNSVL RTLPNFSGDP LPVRVSYTLP PFLKKHVKFS RQMEILTKDA EEVNVKLENE  180
LKVVYGNSLA EVDECEIDFK RRRDDEMVVV YYKFKLDKLV REAKAMEREL ARLKEINPTI  240
VIMLDFYSNH SDSNFLTCFK DSFQYSLKTL DYWAELDHYL EGEYGWECNR EAGEGNNIIR  300
RHPSLTEWQH LFSMAGFSRI PLNHRKDNLS FEDNPSFADN SLLEIMGEEE ECLILGYKQR  360
PMFFLSAWKP KVEDGHFDSN STNHKFGQGF NPNPLPRQPL QPFPEGLKLN RLAALAEIHD  420
ISKYLSCKYK LSLTLTLASK VNNMNETILD PNKKQVFFIQ DNYCYTKDMT SYYFMLDSKD  480
KISGRPLIIE KAFESRDGYH FEPSLSKVED YRDSTLQGYN IDVAVAICLQ NRHTSDEVYI  540
VALYWPPTES EISKSLTLHI FDDLKHMKTT FVTVKVQGPE FKFQEECISS TPTSSNTAMP  600
LEIAENAHIE QVVADPFNTL EGPYNKIVET KRNKQRKSWS KVWVDFDKFE EHGKQVAKCK  660
HCLKVFTGSS KSGTTHLNNH SKVCPGKKKQ NQESQLILPV DTNERSSTFD QETSHLDLVK  720
MVIRHQYPLD LAGQEAFKNF VKGLQPMYEF QSRDKFLWKN NHGKTAYCCL IAHFIDDGWE  780
LKIKILGLRK LEHVYDTKVV GGIIGSFVSE WNISKKVCSI TVDNSFLNDG MVHQIRENCV  840
SEQGSLSTAH WFISFTLLED GFREMDTILS KLWKSIEYVT ETTHGKLNFQ EAVNQVKLQG  900
GKSWDELSFK LESDSDILDS ALRSREIFCK LEQIDDNFML NLSKEEWDKV VTLQSCFKCF  960
DDIKGTQSLT ANLYFPKLCN MYEEFGQLKK SNHPFVILMK RKFDNYWSLC NVAFTIAAAL  1020
DPRLKFRFTC NETYDLESMM KLKRFRKVLM DVYFDYANEA KNLSASSSVL DDSNSLTAET  1080
TKDCIVSYFS KFVSASNVKE VASQKSELDC YLEETLLPSD ADILGWWRIN SQRFPTLAKM  1140
ARDFLAIPVS VSSPCSNVSA MTINPAYSSL DPESMEALVC SQNWLESTKE NDGEHHEPMQ  1200
NMDKRKRKME ENDTSTVKVF KNRTHEKASS NGDIASDFNK NDGSLSFDNW MEPQCSSSES  1260
VGERAEIVDE KTRRKKFCYF STALVYRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	1e-33	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481508.1	0.0	PREDICTED: uncharacterized protein LOC105796367 isoform X1
TrEMBL	A0A0D2S9K4	0.0	A0A0D2S9K4_GOSRA; Uncharacterized protein
STRING	Gorai.005G015100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-28	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G015100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]