PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G003900.2 | ||||||||
Common Name | B456_005G003900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 273aa MW: 30606.8 Da PI: 5.3413 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36.3 | 1.1e-11 | 112 | 158 | 16 | 59 |
TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +gs rsY+rCt++ gC+++k+v++ ++dp ++Y g+H+++ Gorai.005G003900.2 112 RGSYKRRSYFRCTHKtdqGCQATKQVQKLEDDPPKYATIYYGHHTCK 158 688899********99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.9E-11 | 108 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-12 | 112 | 158 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-12 | 112 | 158 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.795 | 112 | 155 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-12 | 113 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MSWNTKKAIE ELVRGKELTK QLRDLLTKSL TDDGFVDSEG LVLKICDTFA NTLSLLTNSN 60 TTTTTAVPDY YYNDDLNDVS QKPTINITSD GRKSEDSGDS IKSPPSTLRD RRGSYKRRSY 120 FRCTHKTDQG CQATKQVQKL EDDPPKYATI YYGHHTCKNK LKPCHFMVDD STCNNDSSIL 180 LSFANDSTLT NKQGNDNPFF SSVKQESKED YKPISEITYN GSSSSDYLLS PHHHQLSTFD 240 LSSADMTVLQ SPDHDVLSDV VDSVHLDDLL QF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438453 | 0.0 | KM438453.1 Gossypium aridum WRKY5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481333.1 | 0.0 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0D2RDC5 | 0.0 | A0A0D2RDC5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G003900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 8e-16 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G003900.2 |
Publications ? help Back to Top | |||
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