PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G288400.1
Common NameB456_004G288400, LOC105792977
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 364aa    MW: 39762.3 Da    PI: 6.5955
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G288400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17249283135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Gorai.004G288400.1 249 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 283
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-7911340IPR016679Transcription factor, GATA, plant
SMARTSM004016.9E-17243293IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.545243279IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14244280IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.14E-15245307No hitNo description
CDDcd002021.74E-14248295No hitNo description
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15249283IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEAPEFFQGT TYCSQLTPEK PAAGGDHFIV EDLLDFSNED AVITDVANFN SSVAGHSTDS  60
STITAVESCN SSSFSGPETN LGGGIGCRSF TDGQFAGDLC VPYDDLAELE WLSNFAEESF  120
SSEDLQKLQL ISGMKTLPNV SSEPRGLQPE LPNQIENAID GGGGDNNHVF HPDMTVPAKA  180
RSKRSRAAPC NWASRLLVLS PTVSSPEPDI IVPVQPLPSN QPGKKPVKTT SSSSKKKDGG  240
ETSSDGRKCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH  300
SNSHRKVLEL RRQKEMVRAQ QHHQQQFMHH HHHHHHQNMV FDVSNGDDYL IHQPVGPDFR  360
QLI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5244650.0HQ524465.1 Gossypium herbaceum clone NBRI_G035 simple sequence repeat marker, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477314.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-91GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0D2N5480.0A0A0D2N548_GOSRA; GATA transcription factor
STRINGGorai.004G288400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-81GATA transcription factor 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]