PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G270400.2 | ||||||||
Common Name | B456_004G270400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 30294.7 Da PI: 5.6361 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.1 | 7.7e-32 | 18 | 102 | 3 | 88 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pGfrFhPtdeel+ +yL++kv++k+l++ e ik++diyk++P+dLpk+ +e+e+yfF++r +ky+++ r+nr+t sg+Wkatgk Gorai.004G270400.2 18 PGFRFHPTDEELIGFYLRRKVDNKSLRI-ELIKQIDIYKYDPSDLPKTSMMGENELYFFCRRGRKYRNSVRPNRVTGSGFWKATGK 102 9***************************.89***************87777899*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-43 | 9 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.923 | 16 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-16 | 18 | 115 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MNMVHGTTTT VDEDVPLPGF RFHPTDEELI GFYLRRKVDN KSLRIELIKQ IDIYKYDPSD 60 LPKTSMMGEN ELYFFCRRGR KYRNSVRPNR VTGSGFWKAT GKGTKTDWMM HEFRLPNPTL 120 TAQDAEVWTI CRIFKRHKKN KQEWRQGAAK RASTSNGNGV HGYERCSVES SSHENYITFG 180 SQSIENYDDN DDDDGVDGEM VMDHMKNDGS CRREWYHEEM QCMVSSSSPS SSFSTENDFF 240 TNANWDELKS VVELDLDPFL L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-37 | 6 | 137 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-37 | 6 | 137 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-37 | 6 | 137 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-37 | 6 | 137 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-37 | 6 | 137 | 1 | 166 | NAC domain-containing protein 19 |
4dul_B | 8e-37 | 6 | 137 | 1 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847240 | 0.0 | KC847240.1 Gossypium hirsutum NAC domain protein NAC63 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314214.1 | 1e-175 | transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_012477038.1 | 1e-175 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_012477039.1 | 1e-175 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_012477040.1 | 1e-175 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A0D2PJ58 | 0.0 | A0A0D2PJ58_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G270400.1 | 1e-175 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-66 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G270400.2 |
Publications ? help Back to Top | |||
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