PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G230100.1
Common NameB456_004G230100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 347aa    MW: 37562.6 Da    PI: 6.0687
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G230100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-19260293134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Gorai.004G230100.1 260 CTHCEVTKTPQWREGPKGPKTLCNACGVRYRSGR 293
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.1E-18254304IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-14256316No hitNo description
PROSITE profilePS5011411.846258290IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.1E-15258291IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.18E-15259306No hitNo description
PfamPF003201.8E-17260293IPR000679Zinc finger, GATA-type
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNNSWFNKCF DGFGVNDGLF DDVVKYLDFP LEDVEGTDDD GASGEGVVKD FHLPLGDVED  60
KSYVGGGGDD GGEDWDCNFQ NLEPPPANVL AGLSSGFCGD FFSDTLENKF PVSCDESSEL  120
NQLSGITKAS SSRSTTTLNG ESVDVKGSTW FQTSSPVSVL ETSSACSSAK PAPINPKLSF  180
LVKRDRSKRR RASTFNLQFT LPSISSTGST SLVGSESESE SHLTEKSAKK RQKKKNLTWL  240
SGSCEIDKSS SEEAAVVRKC THCEVTKTPQ WREGPKGPKT LCNACGVRYR SGRLFPEYRP  300
AASPTFVPSL HSNSHKKVIE MRKQCQAAEV GNTIYGVNST RNRNAI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626781.10.0PREDICTED: GATA transcription factor 11-like
RefseqXP_017626782.10.0PREDICTED: GATA transcription factor 11-like
TrEMBLA0A0D2PGV00.0A0A0D2PGV0_GOSRA; Uncharacterized protein
STRINGGorai.004G230100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-63GATA transcription factor 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]