PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G229600.1
Common NameB456_004G229600, LOC105793444
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28147.3 Da    PI: 6.2876
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G229600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.3e-141151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i ++s r+ t+ kR +g+ KK +ELS+LCd++++ i++ + 
  Gorai.004G229600.1 11 ITDDSARKATYKKRTKGLVKKLSELSTLCDIDACSIMYNPY 51
                        8899*********************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.18149IPR002100Transcription factor, MADS-box
CDDcd002666.89E-28285No hitNo description
SuperFamilySSF554551.02E-21294IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTRKKVKLAY ITDDSARKAT YKKRTKGLVK KLSELSTLCD IDACSIMYNP YESQLEVWPS  60
PMEVQQVLSK LETIPEMEKS KNMLNQESFL SQKTTKASEQ LKKHCKENWE KEMTQVMFNT  120
ICGKGVIHGL NFEALSVINL LLDKKMSDID KRIDALSRTP LNPQWVSSSS SSSLVAVPPM  180
MMVAPEAMPR TGTEDIVQED VNEMDQIQRQ QWIMELMSNN NNNNPQTHVG GDGMMYQFGD  240
NINSNNGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRTKGLVKKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477809.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-42AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0D2R2M30.0A0A0D2R2M3_GOSRA; Uncharacterized protein
STRINGGorai.004G229600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44AGAMOUS-like 80
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]