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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Gorai.004G229400.4 | ||||||||
| Common Name | B456_004G229400 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 710aa MW: 77503.1 Da PI: 6.6674 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 56.7 | 4e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR ++k+
Gorai.004G229400.4 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCRDKQ 83
5679****************************************************996 PP
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| 2 | START | 161.9 | 4.9e-51 | 164 | 371 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90
+ae +++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W ++++ +e+ + g g+
Gorai.004G229400.4 164 IAEGTLKEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNVEVFTMFRAGngGT 253
678899****************************************************.7777777777*******9999999988888** PP
EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
++l+++++ a+++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ +++vRae+lpSg+li+++++g+s v++v+h +l+++++
Gorai.004G229400.4 254 IELIYTQMFAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRSCEGGGSIVHIVDHLNLEAWSV 344
******************************************99999998999************************************** PP
HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
START 178 hwllrslvksglaegaktwvatlqrqc 204
+++lr+l++s+ + ++k++ a+l++ +
Gorai.004G229400.4 345 PEVLRPLYESSKVVAQKMTIAALHYIR 371
***********************9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 15.208 | 20 | 84 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 5.4E-15 | 22 | 88 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 8.98E-16 | 23 | 86 | IPR009057 | Homeodomain-like |
| CDD | cd00086 | 6.22E-16 | 25 | 84 | No hit | No description |
| Pfam | PF00046 | 1.1E-15 | 26 | 83 | IPR001356 | Homeobox domain |
| Gene3D | G3DSA:1.10.10.60 | 2.4E-18 | 27 | 80 | IPR009057 | Homeodomain-like |
| CDD | cd14686 | 9.03E-6 | 77 | 116 | No hit | No description |
| Gene3D | G3DSA:1.20.5.170 | 1.3E-4 | 81 | 130 | No hit | No description |
| PROSITE profile | PS50848 | 25.412 | 154 | 382 | IPR002913 | START domain |
| CDD | cd08875 | 1.06E-70 | 158 | 374 | No hit | No description |
| SMART | SM00234 | 9.8E-42 | 163 | 373 | IPR002913 | START domain |
| Pfam | PF01852 | 2.7E-48 | 164 | 371 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 2.9E-18 | 164 | 349 | IPR023393 | START-like domain |
| SuperFamily | SSF55961 | 4.12E-32 | 164 | 375 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 710 aa Download sequence Send to blast |
MAMAVAQHRE SSSGSNINKH LDNGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR DKQKTEASRL QTVNRKLNAM NKLLMEENDR LQKQVSQLVN 120 ENGYMKQQLH TVNASTNDAS CDSVVTTPPH SLKDANNPAG LLSIAEGTLK EFLSKATGTA 180 VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNV 240 EVFTMFRAGN GGTIELIYTQ MFAPTTLAPA RDFWTLRYTT TLENGSLVVC ERSLSGSGAG 300 PNAAAAAQFV RAEMLPSGYL IRSCEGGGSI VHIVDHLNLE AWSVPEVLRP LYESSKVVAQ 360 KMTIAALHYI RQIAQETSGE VVYGPGRQPA VLRTFSQRLS RGFNDAINGF NDDGWSIMNC 420 DGAEDVIIAI NSNKSLNSTP NAVNALPLLG GVLCAKASML IQNVSPAVLV RFLREHRSEW 480 ADFNVDAYSA VSLKAGSYAY PGMRPTRFTG SQIIMPLGHT IEHEELLEVV RLEGHSFAED 540 NAFLSRDIHL LQLCSGIDEN AVGGCSELLF APINEMFPDD APLLPSGFRV IPLDTKSSDT 600 QDSLATNRTL DLTSSLEPGP ATNHIAVDAP SCPNIRSVLT IAFQFPFDSN LEDNVANMAH 660 QYVRSVISSV QRIAIAISPS GLIPAVGPKQ SPSSPEALTL AHWICRSYR* |
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}. | |||||
| Functional Description ? help Back to Top | ||||||
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| Source | Description | |||||
| UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012476406.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like | ||||
| Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
| TrEMBL | A0A0D2N2I3 | 0.0 | A0A0D2N2I3_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.004G229400.1 | 0.0 | (Gossypium raimondii) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60690.1 | 0.0 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Gorai.004G229400.4 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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