PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G227400.5 | ||||||||
Common Name | B456_004G227400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 831aa MW: 93629 Da PI: 6.5096 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.4 | 2.2e-13 | 63 | 136 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+ +GFs + + +++ k++g+i+ r+fvC +eg +++ +C a+++++++ +kw+v+k+++eH+H+++ Gorai.004G227400.5 63 FYDEYARCMGFSSKAGHFSSQyKTDGTIVAREFVCGREGLKRSA---------------ESCSAMIRIELK-GEKWVVIKFVKEHSHSVM 136 9***************98888799***************98774...............47**********.9**************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-10 | 63 | 136 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-26 | 275 | 367 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.103 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.1E-9 | 562 | 587 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.6E-8 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence Send to blast |
MDFHVIDSEG GLSHHGMSDD GDAEPGEGGE ANHVENSLAC EEDGISEPYV GMEFNSEDAA 60 RTFYDEYARC MGFSSKAGHF SSQYKTDGTI VAREFVCGRE GLKRSAESCS AMIRIELKGE 120 KWVVIKFVKE HSHSVMTSRK VHYLRPRRHF AGAAKTMADS YQGVGVVPSG MMYVSMDGSH 180 VSMDANNRGI RKTPPAEANC SGKNVGTLNY ALRPVNRKRM LGRDAQNLLD YFKKMQAENP 240 GFFYAIQLDE DNRMANVFWA DARSRTAYMH FGDAVKLDTS YRVNRYRVPF APFTGLNHHG 300 QMILFGCALL FDDSEASFVW LFKTFLTAMN DRRPVSLITD QDRAIQTAMS QVFPGVRHCI 360 NKWHVLREGP EKLAHIFHVH PNFQAELYNC INLTETIEEF ELSWSSIIEK YNLGAHDWLH 420 SLYNARAQWV PAYFRDSFFA AITPNQGFDG SFFDGYVNQQ TTLPIFFRQY ELAIENWFER 480 EIEADFDTIC TTPVLRTPSP MEKQAADLYT RKIFTKFQEE LVETFVYTAN RIEGDGAIST 540 FRVAKYEDVN KVYMVTLNYP EIRANCSCQM FEYSGILCRH ILTVFTVTNV LTLPPHYILK 600 RWTRNAKSGV GTDECGGDLH GQESLTSRYN SLCQEAIKYA EDGAIATETF NVAMAALNEV 660 GKKVSVVKKT VAKLAPPDSL ATGAAYDDKK SSTSAPDTAP SLWPQQDEIT RHFNLNDTGT 720 PAQSVSDLNL PRMAPVSLHR DDTHPDNMPV LPCLKSMRWL MENKNSKPGN RLAVIILKLQ 780 DYSNSPSAEM DVKFQLSRIT LEPMLRSMAY ISEQLSTPAN RVAVINLKVC * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476358.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_012476359.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0D2PGS6 | 0.0 | A0A0D2PGS6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2R2G8 | 0.0 | A0A0D2R2G8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G227400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G227400.5 |
Publications ? help Back to Top | |||
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