PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G227400.1
Common NameB456_004G227400, LOC105792364
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 883aa    MW: 99544.6 Da    PI: 6.5408
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G227400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.32.4e-1363136290
                FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY+eYA+ +GFs +  + +++ k++g+i+ r+fvC +eg +++                 +C a+++++++  +kw+v+k+++eH+H+++
  Gorai.004G227400.1  63 FYDEYARCMGFSSKAGHFSSQyKTDGTIVAREFVCGREGLKRSA---------------ESCSAMIRIELK-GEKWVVIKFVKEHSHSVM 136
                         9***************98888799***************98774...............47**********.9**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-1063136IPR004330FAR1 DNA binding domain
PfamPF105511.3E-26275367IPR018289MULE transposase domain
PROSITE profilePS5096611.103553589IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-9562587IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-8564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MDFHVIDSEG GLSHHGMSDD GDAEPGEGGE ANHVENSLAC EEDGISEPYV GMEFNSEDAA  60
RTFYDEYARC MGFSSKAGHF SSQYKTDGTI VAREFVCGRE GLKRSAESCS AMIRIELKGE  120
KWVVIKFVKE HSHSVMTSRK VHYLRPRRHF AGAAKTMADS YQGVGVVPSG MMYVSMDGSH  180
VSMDANNRGI RKTPPAEANC SGKNVGTLNY ALRPVNRKRM LGRDAQNLLD YFKKMQAENP  240
GFFYAIQLDE DNRMANVFWA DARSRTAYMH FGDAVKLDTS YRVNRYRVPF APFTGLNHHG  300
QMILFGCALL FDDSEASFVW LFKTFLTAMN DRRPVSLITD QDRAIQTAMS QVFPGVRHCI  360
NKWHVLREGP EKLAHIFHVH PNFQAELYNC INLTETIEEF ELSWSSIIEK YNLGAHDWLH  420
SLYNARAQWV PAYFRDSFFA AITPNQGFDG SFFDGYVNQQ TTLPIFFRQY ELAIENWFER  480
EIEADFDTIC TTPVLRTPSP MEKQAADLYT RKIFTKFQEE LVETFVYTAN RIEGDGAIST  540
FRVAKYEDVN KVYMVTLNYP EIRANCSCQM FEYSGILCRH ILTVFTVTNV LTLPPHYILK  600
RWTRNAKSGV GTDECGGDLH GQESLTSRYN SLCQEAIKYA EDGAIATETF NVAMAALNEV  660
GKKVSVVKKT VAKLAPPDSL ATGAAYDDKK SSTSAPDTAP SLWPQQDEIT RHFNLNDTGT  720
PAQSVSDLNL PRMAPVSLHR DDTHPDNMPV LPCLKSMRWL MENKNSKPGN RLAVIILKLQ  780
DYSNSPSAEM DVKFQLSRIT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETSTGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSSVQCE PQAEPLPKKH RK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9644087e-31JX964408.1 Gossypium hirsutum clone NBRI_TRANS-677 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476358.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_012476359.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0D2S4D50.0A0A0D2S4D5_GOSRA; Uncharacterized protein
STRINGGorai.004G227400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]