PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G227000.1

Common Name

B456_004G227000, LOC105792366

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 482aa MW: 55019 Da PI: 4.4246

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G227000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.9	4.1e-36	4	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +GfrFhPtdeel+ eyL+ k+ +++ + +vi+e+ di+++ePw+Lp + ++++++ wyf + + ky+++k +r+t +gyWk tgk Gorai.004G227000.1 4 VKGFRFHPTDEELI-EYLQIKTFNRDSLV-QVIAEIpDICEFEPWELPgRsVLQTGDRLWYFMYPPKYKYRNSKLVSRTTLEGYWKITGKA 92 68**********.9**9999666.89************6347788999***************************** PP NAM 90 kevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++++++ +g ++g kktL fykg +++ ++t Wvmhey+l Gorai.004G227000.1 93 RKIVNSeTGMEIGNKKTLLFYKGqcNDKIRNNTCWVMHEYEL 134 99867888*******9833444456899****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-36	2	156	IPR003441	NAC domain
PROSITE profile	PS51005	40.752	3	156	IPR003441	NAC domain
Pfam	PF02365	2.0E-19	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MNMVKGFRFH PTDEELIEYL QIKTFNRDSL VQVIAEIPDI CEFEPWELPG RSVLQTGDRL 60 WYFMYPPKYK YRNSKLVSRT TLEGYWKITG KARKIVNSET GMEIGNKKTL LFYKGQCNDK 120 IRNNTCWVMH EYELKAMLDS TNSHQKTFKL CKLKKKTNIS SKEAGQLDQY SLSDLENHVA 180 INAPLEDILD PNGSSEPEAS NNHNDVHNLC RTVDTYGDER SNQHNIVDED EGPNISTNFV 240 NHVAEDAIPE VPSHIFKVYQ NGLEDNNWVQ DLYSTIEQDD ESCNLIITSF DETITNESSN 300 QHNIVVAEKG IETPIISYDE TVTNERSNQH NIVVIEEGTE MSVISYDETV ANERSNQHNI 360 VDVDEGFEMP SNLKYLVEED TISTELLYND GLYSRSLFGE LLAEPEATNN SNWIQNQYIT 420 KKEDGEFLNS TLADKNKAYL QEGNTQWCLA ADGEGFSLPC IGALMESSNS MEKSSKRPRR 480 M*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MNMVKGFRFH PTDEELIEYL QIKTFNRDSL VQVIAEIPDI CEFEPWELPG RSVLQTGDRL  60
WYFMYPPKYK YRNSKLVSRT TLEGYWKITG KARKIVNSET GMEIGNKKTL LFYKGQCNDK  120
IRNNTCWVMH EYELKAMLDS TNSHQKTFKL CKLKKKTNIS SKEAGQLDQY SLSDLENHVA  180
INAPLEDILD PNGSSEPEAS NNHNDVHNLC RTVDTYGDER SNQHNIVDED EGPNISTNFV  240
NHVAEDAIPE VPSHIFKVYQ NGLEDNNWVQ DLYSTIEQDD ESCNLIITSF DETITNESSN  300
QHNIVVAEKG IETPIISYDE TVTNERSNQH NIVVIEEGTE MSVISYDETV ANERSNQHNI  360
VDVDEGFEMP SNLKYLVEED TISTELLYND GLYSRSLFGE LLAEPEATNN SNWIQNQYIT  420
KKEDGEFLNS TLADKNKAYL QEGNTQWCLA ADGEGFSLPC IGALMESSNS MEKSSKRPRR  480
M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-26	1	162	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-26	1	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-26	1	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-26	1	162	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-26	1	162	18	174	NAC domain-containing protein 19
3swm_B	5e-26	1	162	18	174	NAC domain-containing protein 19
3swm_C	5e-26	1	162	18	174	NAC domain-containing protein 19
3swm_D	5e-26	1	162	18	174	NAC domain-containing protein 19
3swp_A	5e-26	1	162	18	174	NAC domain-containing protein 19
3swp_B	5e-26	1	162	18	174	NAC domain-containing protein 19
3swp_C	5e-26	1	162	18	174	NAC domain-containing protein 19
3swp_D	5e-26	1	162	18	174	NAC domain-containing protein 19
4dul_A	5e-26	1	162	15	171	NAC domain-containing protein 19
4dul_B	5e-26	1	162	15	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476363.1	0.0	PREDICTED: NAC domain-containing protein 45-like isoform X1
TrEMBL	A0A0D2PGQ7	0.0	A0A0D2PGQ7_GOSRA; Uncharacterized protein
STRING	Gorai.004G227000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24377	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	7e-34	TCV-interacting protein

Link Out ? help Back to Top
Phytozome	Gorai.004G227000.1
Entrez Gene	105792366

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]