PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G198100.1

Common Name

B456_004G198100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 357aa MW: 40478.6 Da PI: 5.8196

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G198100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.6	1.4e-24	260	309	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + +++l+++++yF+lpi++AAk+++ ++Tv+K+iCR+yG++RWPhRki+s Gorai.004G198100.1 260 TRNLTLKEIENYFHLPIEKAAKKMEFSATVVKKICRKYGLSRWPHRKIQS 309 689*********************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.461	250	330	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-22	262	309	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MADPSSNAPY DPHCMDDVLK FLEIENPTLD DFTTPEKPFL HPSSPMPHCT TDQIDGNTID 60 PLEDPFIRDF YNNDPHNSQL AYGNQSETVC GNDVNNSRPL SLWPTDPIPY HCSCCQSLRE 120 ILHTNDTFLS FVIEGFDVTK LEIHGRLGMI CHAVLTVEPG SNTPGPRYQM FDFCKKSIED 180 VKQFLTQYCI DRSQAGFTMI KDPLSVFYQT LCVGFLRDEN LYNVQPSSIS GGNQMDQAGN 240 SNNNQEKPAK PSLAVQRERT RNLTLKEIEN YFHLPIEKAA KKMEFSATVV KKICRKYGLS 300 RWPHRKIQSM EKKISNWVES LSSNDPKERA RAKKEIENLQ REIAKFGEGS SKLGDD*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MADPSSNAPY DPHCMDDVLK FLEIENPTLD DFTTPEKPFL HPSSPMPHCT TDQIDGNTID  60
PLEDPFIRDF YNNDPHNSQL AYGNQSETVC GNDVNNSRPL SLWPTDPIPY HCSCCQSLRE  120
ILHTNDTFLS FVIEGFDVTK LEIHGRLGMI CHAVLTVEPG SNTPGPRYQM FDFCKKSIED  180
VKQFLTQYCI DRSQAGFTMI KDPLSVFYQT LCVGFLRDEN LYNVQPSSIS GGNQMDQAGN  240
SNNNQEKPAK PSLAVQRERT RNLTLKEIEN YFHLPIEKAA KKMEFSATVV KKICRKYGLS  300
RWPHRKIQSM EKKISNWVES LSSNDPKERA RAKKEIENLQ REIAKFGEGS SKLGDD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX590589	5e-79	JX590589.1 Gossypium hirsutum clone NBRI_GE25529 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475904.1	0.0	PREDICTED: uncharacterized protein LOC105792067
TrEMBL	A0A0D2R7U7	0.0	A0A0D2R7U7_GOSRA; Uncharacterized protein
STRING	Gorai.004G198100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	7e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.004G198100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]