PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G164700.1 | ||||||||
Common Name | B456_004G164700, LOC105791673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 28237.2 Da PI: 7.4723 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.8 | 3.1e-18 | 168 | 202 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l Gorai.004G164700.1 168 CSHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 202 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 9.6E-82 | 3 | 255 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.385 | 162 | 198 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.7E-15 | 162 | 212 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.62E-14 | 166 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.3E-14 | 166 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.64E-13 | 167 | 214 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 168 | 193 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-16 | 168 | 202 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDIYGISTSE QLDVDDLLDL SNDEFFPSAS AATSHDQFPP SETHFSDASA ASSSSAALTP 60 SFSLDFNHDI CLPSDDVAEL EWLSQFVEDS FTDFPSYSLP GILNPRNDNS SFSSKARSKR 120 SRAVTTLNGT NWTTTTSGAA GTLTGKTKTK REIQRQASPA AVEGMRRCSH CASEKTPQWR 180 TGPLGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTQHS NSHRKVLELR RQKEEQSTRR 240 QQEQVCRQQH RQQVC* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00415 | DAP | Transfer from AT3G60530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475317.1 | 0.0 | PREDICTED: GATA transcription factor 4 | ||||
Swissprot | O49743 | 6e-75 | GATA4_ARATH; GATA transcription factor 4 | ||||
TrEMBL | A0A0D2S0Q5 | 0.0 | A0A0D2S0Q5_GOSRA; GATA transcription factor | ||||
STRING | Gorai.004G164700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3203 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 3e-63 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G164700.1 |
Entrez Gene | 105791673 |
Publications ? help Back to Top | |||
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