PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G157600.1
Common NameB456_004G157600, LOC105791594
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 297aa    MW: 32931.4 Da    PI: 7.7999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G157600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W +eEde+l +++k++G g+W++ ++  g+ R++k+c++rw +yl
  Gorai.004G157600.1 14 KGPWAPEEDEILTNYIKKHGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding48.71.8e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T eE++l +++++ lG++ W++Ia+ ++ +Rt++++k+ w+++l
  Gorai.004G157600.1  67 RGPFTLEEEKLVIQLHAILGNR-WAAIAAQLP-RRTDNEIKNLWNTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.738961IPR017930Myb domain
SuperFamilySSF466891.76E-2911108IPR009057Homeodomain-like
SMARTSM007176.8E-131363IPR001005SANT/Myb domain
PfamPF002499.2E-151461IPR001005SANT/Myb domain
CDDcd001672.62E-101661No hitNo description
PROSITE profilePS5129424.77662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2565116IPR009057Homeodomain-like
SMARTSM007173.1E-1466114IPR001005SANT/Myb domain
PfamPF002491.5E-1467112IPR001005SANT/Myb domain
CDDcd001679.56E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWAPE EDEILTNYIK KHGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TLEEEKLVIQ LHAILGNRWA AIAAQLPRRT DNEIKNLWNT HLKKRLLCMG  120
LDPQTHKPFT PCGGPTVAAP TSPATRHMAQ WESARLEAEA RLSKESLQTN STPIAKPDSD  180
HFLRLWNSEV GESFRKINTE YKTVYPCPSP ISQTSSSTKC GSVSAVTMDV CPNIAGSLNP  240
ASNPIEETEC KSFIKSCIEE PSDSSCSSES EDSSDTALQL LLDFPINNDM SFLENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591819e-71AJ459181.1 Gossypium hirsutum partial myb151 gene, clone pGhMYB151.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475173.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9M2D91e-123MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0D2S0B20.0A0A0D2S0B2_GOSRA; Uncharacterized protein
STRINGGorai.004G157600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-122myb domain protein 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]