PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G155700.1
Common NameB456_004G155700, LOC105791574
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28467.6 Da    PI: 8.7807
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G155700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ 
  Gorai.004G155700.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFG 58
                        79**********************************************95 PP
2K-box94.61.7e-3182171998
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           e++++s++qe+ kLk+++e L+r+qRhllG+dL++L+lkeLq+Le+qLe  l   R++K+++++eq+e+l+kk+++l e nk+L+ kl
  Gorai.004G155700.1  82 IPEHETQSWYQEIIKLKAKYEALERTQRHLLGDDLGPLNLKELQNLEKQLEGTLVLARQRKTQIMMEQMEDLRKKKRQLGELNKQLKIKL 171
                         568899********************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.627161IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-42160IPR002100Transcription factor, MADS-box
CDDcd002652.53E-46272No hitNo description
SuperFamilySSF554558.24E-35285IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2784171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.55887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFGSS  60
GMTKTLERYQ QCCFTPQPQH NIPEHETQSW YQEIIKLKAK YEALERTQRH LLGDDLGPLN  120
LKELQNLEKQ LEGTLVLARQ RKTQIMMEQM EDLRKKKRQL GELNKQLKIK LDGEGQNQKT  180
SQGLWSCCTT AENSHFPLLP SHPNPMECDH EPVLQIGYHH HYVEAEGSSV PRSMAGETNF  240
IHGWVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-23781734104Developmental protein SEPALLATA 3
4ox0_B2e-23781734104Developmental protein SEPALLATA 3
4ox0_C2e-23781734104Developmental protein SEPALLATA 3
4ox0_D2e-23781734104Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556400.0KC155640.1 Gossypium hirsutum MADS box protein MADS45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475144.10.0PREDICTED: agamous-like MADS-box protein AGL6 isoform X4
SwissprotQ8LLR11e-135MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0D2MYT90.0A0A0D2MYT9_GOSRA; Uncharacterized protein
STRINGGorai.004G155700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-110AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]