PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G123100.1
Common NameB456_004G123100, LOC105791226
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 236aa    MW: 27233.4 Da    PI: 7.6169
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G123100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.3e-203084256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +k+++f++eq++ Le+ Fe++ ++  +++ +LA+klgL+ rqV +WFqN+Ra++k
  Gorai.004G123100.1 30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARKLGLQPRQVAIWFQNKRARWK 84
                        56779*************************************************9 PP
2HD-ZIP_I/II126.11.5e-4030122193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kkrr+s+eq++lLE+ Fe+e+kLep++K++lar+Lglqprqva+WFqn+RAR+k+kq+E+dy++Lk++yd+l+++ e+L+ke+++L  ++
  Gorai.004G123100.1  30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARKLGLQPRQVAIWFQNKRARWKSKQIEQDYNTLKANYDNLESRFESLKKEKQSLILQI 120
                         59*************************************************************************************9888 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Gorai.004G123100.1 121 QK 122
                         76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-192087IPR009057Homeodomain-like
PROSITE profilePS5007118.0582686IPR001356Homeobox domain
SMARTSM003891.3E-172890IPR001356Homeobox domain
PfamPF000463.3E-173084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-203193IPR009057Homeodomain-like
CDDcd000862.33E-143587No hitNo description
PRINTSPR000317.6E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000317.6E-66682IPR000047Helix-turn-helix motif
PfamPF021832.5E-1586127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
METDYHPAVD EAIAEQAPQI PRNKKKNKLK KKRRFSDEQI RLLESIFESE TKLEPRKKMQ  60
LARKLGLQPR QVAIWFQNKR ARWKSKQIEQ DYNTLKANYD NLESRFESLK KEKQSLILQI  120
QKLSQLLEEH RKGRKGLDGS STDGGGGGGG SEYGEIKCET EAEGQPSFQH KECLGLQTEN  180
ERDDVKQTGQ GGEEFLIMDE YRNDSPASPD KFYGLHSADM FDHSYTNSQW LNFWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933KKKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474654.11e-175PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468972e-44ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0D2RY401e-174A0A0D2RY40_GOSRA; Uncharacterized protein
STRINGGorai.004G123100.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1899938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-35homeobox 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]