PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G113700.2 | ||||||||
Common Name | B456_004G113700, LOC105791106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 168aa MW: 19109.7 Da PI: 8.3295 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++ ++ +q+++Le+ F +++ e++ +L+++lgL+ rqV +WFqNrRa++k Gorai.004G113700.2 57 KKRHLSMHQVKALEKNFDVGNKLEPERKVKLTEELGLQPRQVAIWFQNRRARWK 110 556899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 108.5 | 5e-35 | 56 | 127 | 1 | 72 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda 72 ekkr+ls +qvk+LE++F+ +kLeperKv+l++eLglqprqva+WFqnrRAR+ktk lEkdy++Lk++ ++ Gorai.004G113700.2 56 EKKRHLSMHQVKALEKNFDVGNKLEPERKVKLTEELGLQPRQVAIWFQNRRARWKTKVLEKDYAMLKANREK 127 69*****************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-18 | 45 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-16 | 55 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.73E-14 | 57 | 112 | No hit | No description |
Pfam | PF00046 | 6.5E-16 | 57 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.3E-5 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 3.3E-5 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKRLSPSPSL DAFMSISQPK EDKSSKKHQI YSKEFQAMLD GLDEEDSLEE GGQATEKKRH 60 LSMHQVKALE KNFDVGNKLE PERKVKLTEE LGLQPRQVAI WFQNRRARWK TKVLEKDYAM 120 LKANREKEPP RNCSDCLHCP SDNRQLSGDD CPLVPPKSSP EMTVNGS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243121 | 1e-165 | AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474469.1 | 1e-122 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2 | ||||
Swissprot | P46667 | 6e-37 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A0D2MWU7 | 1e-120 | A0A0D2MWU7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G113700.1 | 1e-119 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 9e-37 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G113700.2 |
Entrez Gene | 105791106 |
Publications ? help Back to Top | |||
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