PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G099100.1
Common NameB456_004G099100, LOC105790939
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 545aa    MW: 58805.2 Da    PI: 7.3301
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G099100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14182241155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Gorai.004G099100.1 182 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 241
                         57*******************666664477446**********99*************98 PP
2AP247.15.8e-15284335155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gorai.004G099100.1 284 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 335
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-12182241IPR001471AP2/ERF domain
CDDcd000181.16E-21182251No hitNo description
SuperFamilySSF541715.43E-17182251IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-15183250IPR001471AP2/ERF domain
PROSITE profilePS5103218.927183249IPR001471AP2/ERF domain
SMARTSM003806.1E-29183255IPR001471AP2/ERF domain
PRINTSPR003672.4E-6184195IPR001471AP2/ERF domain
PfamPF008477.2E-10284335IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18284345IPR016177DNA-binding domain
CDDcd000189.57E-25284345No hitNo description
PROSITE profilePS5103219.045285343IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18285344IPR001471AP2/ERF domain
SMARTSM003801.5E-33285349IPR001471AP2/ERF domain
PRINTSPR003672.4E-6325345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MNIGSMDSSS GPNNSLAFSL SSHHHHQNHL SFFSSSSNPA LFQAFNTSAA AAVPTTTSPA  60
NSLSAEKDAG GEGPATTASA TTDLSMFKGG PKLEDFLGGS STTPGVGGAP QLQLLHHHNF  120
STQTPVTVSD NDIYDSELKT IAAIFLRGFS SEQIDIHKQQ QQAPIAEPAP KRSVDTFGQR  180
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW  240
GPTTTTNFPI SNYEKELEEM KNMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA  300
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVN SIANSNLPIG  360
GLNNKSKNCN DSASDRSTDE ERDHSGSSGM TFTSQPTACS TVGFAINIKQ DPSDYWSNVL  420
GYNDTGASLS SAKNPMFHHS PNGSGFQSPS GFCTGNGGNS AVNGSINNGL FNRGGYVGQE  480
QQESSAATNS HPLATPIVLN NSDNYESSSS GYGGNWNLAQ SFQSTYQTAK PSLSVFQTPI  540
FGME*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474200.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-168AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D2MW380.0A0A0D2MW38_GOSRA; Uncharacterized protein
STRINGGorai.004G099100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-156AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]