PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G014800.1
Common NameB456_004G014800, LOC105790071
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 434aa    MW: 45036.2 Da    PI: 8.5523
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G014800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.66.7e-682203803153
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 
                         s +a+CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq + aaa++  a s+ +++ +k++r   +++++++s+t++s
  Gorai.004G014800.1 220 SSGATCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMSAAATTAGAGSSgSTSGAKKPRL-VTSQTTTTSHTSTS 309
                         56789**********************************************9999998887777746666777776.588999999***** PP

              DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         +++++++++tss          lP +v+++avf+cvrv++v+ ge+e+aYq++v+igGhvfkG+LydqG+e
  Gorai.004G014800.1 310 NTTPPRSFDTSSshqdvglketLPGQVRAPAVFKCVRVTAVEGGEDEYAYQAVVKIGGHVFKGFLYDQGVE 380
                         **********999********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-62222380IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-27224266IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-28332379IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVRKDFFFYY KGRKIYFCYF FVVVIVATTR GQLPSDTGGT FADWATSSST AIRAGPDDLL  60
SLGFNPNAAS PAATAAAPAQ WPPSARPINN GLAGPEMGMV GLRDFVVVAP AASFNHHHHH  120
HHHHTQDPIM VNEQINGPSS AAAAVTALGV GVIPLLTAAP CLPPQNVEDT GKFSGIQLWQ  180
NQSSSHYLKK PASFLDNSNP SMMAGDGGGM GGGSGGSGSS SGATCQDCGN QAKKDCTHRR  240
CRTCCKSRGF DCPTHVKSTW VPAARRRERQ LMSAAATTAG AGSSGSTSGA KKPRLVTSQT  300
TTTSHTSTSN TTPPRSFDTS SSHQDVGLKE TLPGQVRAPA VFKCVRVTAV EGGEDEYAYQ  360
AVVKIGGHVF KGFLYDQGVE GRDGFPNISE LHLGGGGRNA GSSSSPGLDP SDVYAATGGG  420
FLGGGLGYGN PIN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935231e-119GQ393523.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0488 SSR marker CGR5515 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472932.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X3
SwissprotQ94CK97e-93LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0D2RRP90.0A0A0D2RRP9_GOSRA; Uncharacterized protein
STRINGGorai.004G014800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.45e-81Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]