PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G185700.4
Common NameB456_003G185700, LOC105789386
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 400aa    MW: 42532.7 Da    PI: 6.7512
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G185700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.93.9e-22299361163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e++++k e+++l +e+
  Gorai.003G185700.4 299 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAEN 361
                         89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.6E-27493IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.6E-49132266No hitNo description
Gene3DG3DSA:1.20.5.1705.7E-17292357No hitNo description
SMARTSM003382.6E-21299363IPR004827Basic-leucine zipper domain
PfamPF001701.6E-20299361IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.047301364IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-11302358No hitNo description
CDDcd147027.50E-24304354No hitNo description
PROSITE patternPS000360306321IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDKTAQEKEP KTLPASSSQE PSSTTNSAGP ANGDWSGFQA YSPIPPHGFL ASSPQAPPYM  60
WGVQHIIPPY GTPPHPYVAM YPHGGIYAHP SIPPGSYPFS PFAMPSPNGI VEASGNTPGN  120
MEADGKPSDV KEKLPIKRSK GSLGSLNMIT GKNNNLGKES GASANGAYSR SAESGSEGTS  180
EGSEENSHND SHLKSGGRQD SGEGEASQNG NSAHGPQNGG ANTMVSTALP IVPISTAVAT  240
TAVPGPTTNL HIGMDYWGSP ASSTIPAMRG KVPPTPVAGG IVTPASRDSV QSQIWLQDER  300
ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEVLKEEN ASLRSEANRI KSEYEQLLAE  360
NTSLKERLKE IPGHEDLNSS RNDQHTNNDK QIEQVQGSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321RRSRLRK
2315322RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472219.10.0PREDICTED: transcription factor HBP-1a isoform X2
SwissprotQ501B21e-167BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D2MQR30.0A0A0D2MQR3_GOSRA; Uncharacterized protein
STRINGGorai.003G185700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-148basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]