PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G185700.1

Common Name

B456_003G185700, LOC105789386

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 401aa MW: 42660.8 Da PI: 6.7512

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G185700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	69.9	3.9e-22	300	362	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e++++k e+++l +e+ Gorai.003G185700.1 300 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAEN 362 89*********************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.1E-25	4	94	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	8.7E-49	133	267	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.8E-17	293	358	No hit	No description
SMART	SM00338	2.6E-21	300	364	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-20	300	362	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.047	302	365	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-11	303	359	No hit	No description
CDD	cd14702	8.59E-24	305	355	No hit	No description
PROSITE pattern	PS00036	0	307	322	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDKTAQEKEP KTLPASSSQE PSSTTNSAGP ANGDWSGFQQ AYSPIPPHGF LASSPQAPPY 60 MWGVQHIIPP YGTPPHPYVA MYPHGGIYAH PSIPPGSYPF SPFAMPSPNG IVEASGNTPG 120 NMEADGKPSD VKEKLPIKRS KGSLGSLNMI TGKNNNLGKE SGASANGAYS RSAESGSEGT 180 SEGSEENSHN DSHLKSGGRQ DSGEGEASQN GNSAHGPQNG GANTMVSTAL PIVPISTAVA 240 TTAVPGPTTN LHIGMDYWGS PASSTIPAMR GKVPPTPVAG GIVTPASRDS VQSQIWLQDE 300 RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLKEE NASLRSEANR IKSEYEQLLA 360 ENTSLKERLK EIPGHEDLNS SRNDQHTNND KQIEQVQGSQ *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDKTAQEKEP KTLPASSSQE PSSTTNSAGP ANGDWSGFQQ AYSPIPPHGF LASSPQAPPY  60
MWGVQHIIPP YGTPPHPYVA MYPHGGIYAH PSIPPGSYPF SPFAMPSPNG IVEASGNTPG  120
NMEADGKPSD VKEKLPIKRS KGSLGSLNMI TGKNNNLGKE SGASANGAYS RSAESGSEGT  180
SEGSEENSHN DSHLKSGGRQ DSGEGEASQN GNSAHGPQNG GANTMVSTAL PIVPISTAVA  240
TTAVPGPTTN LHIGMDYWGS PASSTIPAMR GKVPPTPVAG GIVTPASRDS VQSQIWLQDE  300
RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLKEE NASLRSEANR IKSEYEQLLA  360
ENTSLKERLK EIPGHEDLNS SRNDQHTNND KQIEQVQGSQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	322	RRSRLRK
2	316	323	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:18315949, ECO:0000269\|PubMed:22718771, ECO:0000305\|PubMed:18315949}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472217.1	0.0	PREDICTED: transcription factor HBP-1a isoform X1
Refseq	XP_012472218.1	0.0	PREDICTED: transcription factor HBP-1a isoform X1
Swissprot	Q501B2	1e-165	BZP16_ARATH; bZIP transcription factor 16
TrEMBL	A0A0D2RPY6	0.0	A0A0D2RPY6_GOSRA; Uncharacterized protein
STRING	Gorai.003G185700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3701	25	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-147	basic region/leucine zipper transcription factor 16

Link Out ? help Back to Top
Phytozome	Gorai.003G185700.1
Entrez Gene	105789386

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]