PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.003G185000.2 | ||||||||
Common Name | B456_003G185000, LOC105789379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 765aa MW: 85548.5 Da PI: 5.6095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.9 | 1.3e-21 | 77 | 132 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+ +++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Gorai.003G185000.2 77 KKRYHRHTAHQIQELEAVFKDCPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 132 688999***********************************************998 PP | |||||||
2 | START | 146.2 | 3.2e-46 | 265 | 491 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla.. 77 la +a++elvk+ +ep+Wv+ e+g+evl e s+ +++ea+r+s vv+m++ +lv ++d +W e ++ Gorai.003G185000.2 265 LAMSATDELVKMCRTNEPLWVRNN--ETGKEVLNLDEHSRMfhwplnlkqrsseFRTEASRDSSVVIMNSITLVDAFVDAH-KWMELFPsi 352 678899****************99..**********99999****************************************.******999 PP ..EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE....TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ..kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq...lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 +a+ ++vis+g g lqlm+ael +lsplvp R+ +f+Ry++q + + w+ivd +d + + s+ +++pSg+li ++ Gorai.003G185000.2 353 vaRAKCVQVISQGvsgtnGCLQLMYAELHMLSPLVPtREAYFLRYCQQqnvEDETYWAIVDFPLDGFHNSL-QTSFPLYKRRPSGCLILDM 442 99**********************************************99888888*****9999887765.78888888*********** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +ng+s+vtwveh++ +++ +h+++ ++v+sg+a+ga++w+a l+rqce+ Gorai.003G185000.2 443 PNGYSRVTWVEHAEIEEKPIHQIFSHFVHSGMAFGANRWLAVLERQCER 491 ***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-20 | 69 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-22 | 73 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-20 | 76 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.38E-20 | 77 | 135 | No hit | No description |
Pfam | PF00046 | 4.8E-19 | 77 | 132 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.707 | 255 | 494 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-29 | 256 | 493 | No hit | No description |
CDD | cd08875 | 1.79E-111 | 259 | 490 | No hit | No description |
SMART | SM00234 | 3.6E-31 | 264 | 491 | IPR002913 | START domain |
Pfam | PF01852 | 7.0E-39 | 265 | 491 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.4E-16 | 509 | 743 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 765 aa Download sequence Send to blast |
MYGDCEAISS MGGNMVVSSE TLFTSTFQNP NFTYLPLEPL PPMITKEENG SLLRGKEEMK 60 SGSESELQET TEQPLKKKRY HRHTAHQIQE LEAVFKDCPH PDDKQRMKLS QELGLKPRQV 120 KFWFQNRRTQ MKAQQDRSEN VILRAENDSL KSEFYRLQAE LSKLVCPNCG GPPVPGGVSF 180 DELRIENARL GEELERVCAI ASRYIGRPIQ TMGELMPPSL ELDMNIYPRQ FLEPMPPPIL 240 SETPSYLDNN NLILMEEEKT IAMELAMSAT DELVKMCRTN EPLWVRNNET GKEVLNLDEH 300 SRMFHWPLNL KQRSSEFRTE ASRDSSVVIM NSITLVDAFV DAHKWMELFP SIVARAKCVQ 360 VISQGVSGTN GCLQLMYAEL HMLSPLVPTR EAYFLRYCQQ QNVEDETYWA IVDFPLDGFH 420 NSLQTSFPLY KRRPSGCLIL DMPNGYSRVT WVEHAEIEEK PIHQIFSHFV HSGMAFGANR 480 WLAVLERQCE RVASLMATNI PDIGVIPSPE ARKNLMRLSQ RMIRTFCVNI SSCSGQVWTA 540 VPDSTDDTVR ITTRKVSEAG QPNGLILCAV STTWLPYPHH DVFDLLRDER RRAQLEVLSN 600 GNALHEVAHI ANGSHPGNCI SLLRINVSSN SSQHVDLMLQ ESCTNKSGSL VVYSTVDVDS 660 VQLAMSGEDP SCIPLLPLGF FITPMELVND GGCKDEANGH NITAGSLLTV GLQVLASTIP 720 SAKINLSSIA AINNHLCTTV QQISSALSSN CIGSCNEGDN GKEK* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gra.2260 | 0.0 | flower| flowering |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 48821741 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF530914 | 0.0 | AF530914.1 Gossypium hirsutum homeodomain protein GhHOX2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472200.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X1 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A0D2RPW2 | 0.0 | A0A0D2RPW2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G185000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.003G185000.2 |
Entrez Gene | 105789379 |
Publications ? help Back to Top | |||
---|---|---|---|
|