PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G184900.6 | ||||||||
Common Name | B456_003G184900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 468aa MW: 53550.1 Da PI: 6.1458 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.2 | 5.2e-22 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Gorai.003G184900.6 91 KKRYHRHTAHQIQELEAVFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 146 688999***********************************************998 PP | |||||||
2 | START | 91.7 | 1.5e-29 | 278 | 462 | 2 | 164 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla.. 77 la +a++e+ k+ +ep+Wv+ e+g+evl e s+ +++ea+r+s vv+m++ +lv ++d + +W e ++ Gorai.003G184900.6 278 LAMSATDEVAKMCRTNEPLWVRNN--ETGKEVLNLDEHSRMfhwplnlkqrsseFRTEASRDSSVVIMNSITLVDAFVDAN-KWMELFPsi 365 6778999***************99..**********99999****************************************.******999 PP ..EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE....TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ..kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq...lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 +a+ ++vis+g g lqlm+ael +lsplvp R+ +f+Ry++q + + w+ivd +d + + s+ +++pSg+li+++ Gorai.003G184900.6 366 vaRAKCVQVISQGvsgtnGCLQLMYAELHVLSPLVPtREAYFLRYCQQqnvEDETYWAIVDFPLDGFHNSL-QTSFPLYKRRPSGCLIQDM 455 99**********************************************99888888*****9999887765.78888888*********** PP CTCEEEE CS START 158 snghskv 164 +ng+s+v Gorai.003G184900.6 456 PNGYSRV 462 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-20 | 83 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 87 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-20 | 90 | 152 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-19 | 91 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.06E-19 | 91 | 149 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 28.744 | 268 | 467 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.34E-21 | 269 | 463 | No hit | No description |
CDD | cd08875 | 4.13E-87 | 272 | 462 | No hit | No description |
Pfam | PF01852 | 4.9E-23 | 278 | 462 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
SEAKTVRETK RGRKMYGDCE AISSMGGNMV VSSETLFTST FQNPNFTYLP LEPLPPMIPK 60 EENGSLLRGK EEMKSGSESE LQETTEQPLK KKRYHRHTAH QIQELEAVFK ECPHPDDKQR 120 MKLSQELGLK PRQVKFWFQN RRTQMKAQQD RSENVILRAE NESLKSEFYR LQAELSKLVC 180 PNCGGPPVPG GVSFDELRIE NARLGEELER VCAIASRYIG RPIQTMGALM PPSLELDMNI 240 YPRQFLEPMP PTLSETPSYP DNNNLILMEE EKTIAMELAM SATDEVAKMC RTNEPLWVRN 300 NETGKEVLNL DEHSRMFHWP LNLKQRSSEF RTEASRDSSV VIMNSITLVD AFVDANKWME 360 LFPSIVARAK CVQVISQGVS GTNGCLQLMY AELHVLSPLV PTREAYFLRY CQQQNVEDET 420 YWAIVDFPLD GFHNSLQTSF PLYKRRPSGC LIQDMPNGYS RVRPFNF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY338496 | 0.0 | AY338496.1 Gossypium hirsutum homeodomain protein BNLGHi6863 (bnlghi6863) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472199.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5-like | ||||
Swissprot | Q9FJS2 | 1e-152 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A0D2MQP7 | 0.0 | A0A0D2MQP7_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.003G184900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 1e-141 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G184900.6 |
Publications ? help Back to Top | |||
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