PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G142600.2

Common Name

B456_003G142600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 249aa MW: 27156 Da PI: 10.6495

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G142600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.8	1.5e-18	163	197	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C +tkTp+WR+gp g+ktLCnaCG+++r+ +l Gorai.003G142600.2 163 CLHCEVTKTPQWREGPMGPKTLCNACGVRFRSGRL 197 99*****************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.5E-17	157	211	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.372	157	193	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.9E-14	161	220	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.5E-14	161	194	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.20E-14	162	209	No hit	No description
Pfam	PF00320	2.0E-16	163	197	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	163	188	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MFSPACLPDF LCDGSSQLNQ WSSVTEASSG RSVTLHSEST DVKGSIRFQT SSPVSVLESS 60 STCSAANPVP INPKLGFLVK RGRSKRRRAS AFNVHFTLPF TSSTSSTSRG SNSSVGSESE 120 SESHLTEEPA KKRLKKKMNL TWLSDFSEMK KSPSRQPIEV RKCLHCEVTK TPQWREGPMG 180 PKTLCNACGV RFRSGRLLPE YRPAASPTFV PALHSNSHKK VVEMRKQANL PMTGTPPMLS 240 IPQAPISM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471520.1	1e-148	PREDICTED: GATA transcription factor 11-like isoform X1
Swissprot	Q6DBP8	3e-49	GAT11_ARATH; GATA transcription factor 11
TrEMBL	A0A0D2QTF3	1e-180	A0A0D2QTF3_GOSRA; Uncharacterized protein
STRING	Gorai.003G142600.1	1e-148	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	4e-41	GATA transcription factor 11

Link Out ? help Back to Top
Phytozome	Gorai.003G142600.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]