PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G140100.2

Common Name

B456_003G140100, LOC105788925

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 881aa MW: 99246.9 Da PI: 6.5801

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G140100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45	3.5e-14	62	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eY +++GF+ ++ + ++sk++g+++ r+fvC k g ++++ ++ C+a+l+++++ +kw+vtk+++eH H+++ Gorai.003G140100.2 62 YYDEYCRHMGFNSKVGQLSRSKTDGTVVAREFVCGKDGLKRRSADS--------------CDAMLRIELK-GDKWVVTKFVKEHRHSVT 135 8************************************9998877..............******.9************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-10	62	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-25	274	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.165	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-10	560	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDVHVIGPEE GMSHRGISDD GDAEPSEGEL NHLNNSLAHD EDEISEPYLG MEFDSEGAAK 60 TYYDEYCRHM GFNSKVGQLS RSKTDGTVVA REFVCGKDGL KRRSADSCDA MLRIELKGDK 120 WVVTKFVKEH RHSVTSPSKV HYLRPRRHFA GAAKTMVDTC QGVGIVPSGV MYVSMDGNRA 180 SMNANTRGVR NTPLAEANRS AKNFGTLSYA VRPVTRKRTL GRDAQNLLDY FKKMQAENPG 240 FFYAIQLDDD NQMANAFWAD ARSRTAYAHF GDAVKLDTSY RVNQYRVPFA PFSGMNHHGQ 300 TILFGCALLL DDSDASFVWL FKTFLTAMND RQPVSLITNQ DRAIQTAVSQ VFPGVRHCIN 360 KWHILREGPE KLAHVCQVHP NFQVELYNCI NLTETIEEFE LSWSSLIEKY NLSAHDWLQS 420 LYSARAQWVP VYFRDSFFAA ISLNQGFDGS FFYGYVNQQT TIPMFFRQYE RAMENWFERE 480 IEADFDTICT TPVLRTPSPM EKQAADLYTR KIFTKFQEEL VETFVYTANR IDGDETISTF 540 RVAKFEDVNK AYMVTLNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKSGVG TDERGGELHG QVSLTARYNS LCREAIKYAE DGAIATETYN SAMGALKEGG 660 KKVSVVKKNV AKFAPPGSQA STAAYDDNSS STLGPDTAPL LWPQQDEITW RFNLNDTGAP 720 TQSVSDLNLP HMAPVSLHRD DGHPDNMPVL PCLKSMTWEM ENKNSMPGNR VAVINLKLQD 780 FGKNPSAEME VKFQLSRVTL EPMLRSMAYI SEQLSTPANR VAVINLKLQD SETTTGESEV 840 KFQVSRDTLG AMLRSMAYIQ EQLSNGNEAQ AEPLPKKHRR *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDVHVIGPEE GMSHRGISDD GDAEPSEGEL NHLNNSLAHD EDEISEPYLG MEFDSEGAAK  60
TYYDEYCRHM GFNSKVGQLS RSKTDGTVVA REFVCGKDGL KRRSADSCDA MLRIELKGDK  120
WVVTKFVKEH RHSVTSPSKV HYLRPRRHFA GAAKTMVDTC QGVGIVPSGV MYVSMDGNRA  180
SMNANTRGVR NTPLAEANRS AKNFGTLSYA VRPVTRKRTL GRDAQNLLDY FKKMQAENPG  240
FFYAIQLDDD NQMANAFWAD ARSRTAYAHF GDAVKLDTSY RVNQYRVPFA PFSGMNHHGQ  300
TILFGCALLL DDSDASFVWL FKTFLTAMND RQPVSLITNQ DRAIQTAVSQ VFPGVRHCIN  360
KWHILREGPE KLAHVCQVHP NFQVELYNCI NLTETIEEFE LSWSSLIEKY NLSAHDWLQS  420
LYSARAQWVP VYFRDSFFAA ISLNQGFDGS FFYGYVNQQT TIPMFFRQYE RAMENWFERE  480
IEADFDTICT TPVLRTPSPM EKQAADLYTR KIFTKFQEEL VETFVYTANR IDGDETISTF  540
RVAKFEDVNK AYMVTLNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKSGVG TDERGGELHG QVSLTARYNS LCREAIKYAE DGAIATETYN SAMGALKEGG  660
KKVSVVKKNV AKFAPPGSQA STAAYDDNSS STLGPDTAPL LWPQQDEITW RFNLNDTGAP  720
TQSVSDLNLP HMAPVSLHRD DGHPDNMPVL PCLKSMTWEM ENKNSMPGNR VAVINLKLQD  780
FGKNPSAEME VKFQLSRVTL EPMLRSMAYI SEQLSTPANR VAVINLKLQD SETTTGESEV  840
KFQVSRDTLG AMLRSMAYIQ EQLSNGNEAQ AEPLPKKHRR *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471467.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0D2QKG1	0.0	A0A0D2QKG1_GOSRA; Uncharacterized protein
STRING	Gorai.003G140100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Gorai.003G140100.2
Entrez Gene	105788925

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]