PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G130700.4

Common Name

B456_003G130700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 687aa MW: 76168.3 Da PI: 9.568

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G130700.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	566	615	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Gorai.003G130700.4 566 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 615 6789999*****************9988889************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	3.06E-5	375	459	IPR029071	Ubiquitin-related domain
PROSITE profile	PS51294	14.733	561	620	IPR017930	Myb domain
SMART	SM00717	2.0E-7	565	618	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-10	566	616	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.26E-15	567	648	IPR009057	Homeodomain-like
CDD	cd11660	3.71E-17	567	617	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MDSMAIRCLL LHEQPDQPGV PFKKRVEDKR ISAFDLLATV AGKLLLDKES TPVSSNTSSA 60 EDKSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS CSFRKSPSLK 120 NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCGA SGGRIKLEFE 180 NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS YGFNNHLGSF 240 PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY LKVAPRLNDV 300 TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS EGISDSPEQS 360 INGNASGVYP KMRGVKFRIK SFRVPELFIE IPESATIGSL KRTVMEAVTA ILGGGLRIGV 420 LLQGKKVRDD NKTLLQTGIS RDNQMDALGF SLEPNPSQTF PSHCPGGSPL KFPCDTPLPL 480 ARYPATPGLV TRVTHDPSHE PHMHNLGNFV ESDHDSAPSP TDMSLDKSTT DSKALVAVPA 540 MSVEALDVVP AHRKSKRSEV VQRRIRRPFS VAEVEALVQA VEKLGTGRWR DVKLRAFDNA 600 KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ AKQQLKQQQQ 660 PESCLLLYNS TVRASSRSDG GEKNFG*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MDSMAIRCLL LHEQPDQPGV PFKKRVEDKR ISAFDLLATV AGKLLLDKES TPVSSNTSSA  60
EDKSKVEKNT VKEERRDGNQ SSKLETCDQY SNDREFIISQ LVSQTNDLRS CSFRKSPSLK  120
NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNEMGSLPCK VETGPFLCGA SGGRIKLEFE  180
NKGPIHEELD RTDKLSFREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS YGFNNHLGSF  240
PGKRDDLKIV SRDDDEKSSG CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY LKVAPRLNDV  300
TLSNSDENLK SAYCDRSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS EGISDSPEQS  360
INGNASGVYP KMRGVKFRIK SFRVPELFIE IPESATIGSL KRTVMEAVTA ILGGGLRIGV  420
LLQGKKVRDD NKTLLQTGIS RDNQMDALGF SLEPNPSQTF PSHCPGGSPL KFPCDTPLPL  480
ARYPATPGLV TRVTHDPSHE PHMHNLGNFV ESDHDSAPSP TDMSLDKSTT DSKALVAVPA  540
MSVEALDVVP AHRKSKRSEV VQRRIRRPFS VAEVEALVQA VEKLGTGRWR DVKLRAFDNA  600
KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ AKQQLKQQQQ  660
PESCLLLYNS TVRASSRSDG GEKNFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	2e-57	550	656	1	107	Telomere binding protein TBP1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1661	2e-82	flower\| flowering

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269\|PubMed:15364931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471314.1	0.0	PREDICTED: telomere repeat-binding protein 5
Refseq	XP_012471315.1	0.0	PREDICTED: telomere repeat-binding protein 5
Swissprot	Q6R0E3	1e-144	TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBL	A0A0D2QSU8	0.0	A0A0D2QSU8_GOSRA; Uncharacterized protein
STRING	Gorai.003G130700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-115	TRF-like 2

Link Out ? help Back to Top
Phytozome	Gorai.003G130700.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]