PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G103000.1
Common NameB456_003G103000, LOC105788478
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26925.7 Da    PI: 9.6417
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G103000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13.1e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr g++KKA+E+SvLCda+va+++fss+gkl+ey++
  Gorai.003G103000.1  9 KRIENKINRQVTFSKRRSGLMKKAHEISVLCDAQVALMVFSSKGKLFEYAT 59
                        79***********************************************86 PP
2K-box996.7e-33811747100
               K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                            e +++ +++ e+akLk+++e+Lqr++Rh+ Ged+++Lsl+eLq+LeqqL+++lk+iRs+Kn+l+le+i+elqkk k+lqe+n+ L kk
  Gorai.003G103000.1  81 ATDEIQQNGNWTWEHAKLKARMETLQRNLRHYEGEDIQNLSLRELQNLEQQLDSALKRIRSRKNQLMLESISELQKKDKALQEQNNILAKK 171
                         556678899********************************************************************************** PP

               K-box  98 lee 100
                         l+e
  Gorai.003G103000.1 172 LKE 174
                         986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
CDDcd002651.54E-40275No hitNo description
SuperFamilySSF554552.75E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014868.6E-2783172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.71188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLMK KAHEISVLCD AQVALMVFSS KGKLFEYATE  60
SCMERILERY ERNSYTEIQC ATDEIQQNGN WTWEHAKLKA RMETLQRNLR HYEGEDIQNL  120
SLRELQNLEQ QLDSALKRIR SRKNQLMLES ISELQKKDKA LQEQNNILAK KLKEKEKTNV  180
EQAHWQLNNN CQDSSSMLLP LNISSNGREK EETTNSGVLL PWMIRHHLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-21174173Myocyte-specific enhancer factor 2B
1tqe_R2e-21174173Myocyte-specific enhancer factor 2B
1tqe_S2e-21174173Myocyte-specific enhancer factor 2B
5f28_A2e-21170169MEF2C
5f28_B2e-21170169MEF2C
5f28_C2e-21170169MEF2C
5f28_D2e-21170169MEF2C
6c9l_A2e-21174173Myocyte-specific enhancer factor 2B
6c9l_B2e-21174173Myocyte-specific enhancer factor 2B
6c9l_C2e-21174173Myocyte-specific enhancer factor 2B
6c9l_D2e-21174173Myocyte-specific enhancer factor 2B
6c9l_E2e-21174173Myocyte-specific enhancer factor 2B
6c9l_F2e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556380.0KC155638.1 Gossypium hirsutum MADS box protein MADS43 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470851.11e-167PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ6E6S71e-100AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0D2RK071e-166A0A0D2RK07_GOSRA; Uncharacterized protein
STRINGGorai.003G103000.11e-167(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-96AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]