PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G096100.2

Common Name

B456_003G096100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 771aa MW: 88227.5 Da PI: 8.9107

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G096100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.7	1.1e-24	32	118	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YAk +GFsvrk k + s ng+ krtf Cs+eg+r +++++ + r +r+etrtgC a++++++e ++kw++++l+l+HnH+l+ Gorai.003G096100.2 32 KFYKDYAKATGFSVRKGKYQWS-SNGTARKRTFLCSNEGFRLSKTSS-SALRYRRKETRTGCGAMVQITNE-TEKWMISRLVLKHNHSLV 118 6**************98887.8888************9999.99999*************9.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-21	32	118	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-22	226	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.644	495	541	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	512	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-6	516	543	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MLQQSKLKID HQISIQAPEL GMEFSSEEDA YKFYKDYAKA TGFSVRKGKY QWSSNGTARK 60 RTFLCSNEGF RLSKTSSSAL RYRRKETRTG CGAMVQITNE TEKWMISRLV LKHNHSLVEG 120 SYTRNRQALE DHWTKRTMGK TRMAQKAGDA ICAKVRNADF SSHLSYLNQC NLNPEDIQGL 180 INYFKQQQLE DPSFFYTLQV DAKSSLISFI WRDGRSKTDY QHFGDVVVLD TTFRVGSEGM 240 ICAPLLGLNH HRQYVLLGCA LLLDESLDSF MWLFGTLMAA MDGLQPKTIL TNECQAMADA 300 IKEVLPDTQH HLGMWYIQQT IEEYLPEPHH QSAFRNLLDK CIFDCQSEEE FDMLWNSLVD 360 QYKLHENERL KTLYMLRKKW SPVFARSTFF AGIQSADGCK AIRTIFQSLM KENMTLLKFA 420 HRYQTVAKEQ RTKEIDDDLC CKKMSPLMIL KGSTLEKQAA DVYTYTIFKL FQDELRGCLS 480 VAIKDMGKTG TVASFKLKEE GQKDNIVKFC DSSNQITCSC KKYESMGILC VHILKVLNAK 540 NVFKLPSQYI LKRWTKSATD GNVLNHQKSL KVKKLMQKAL HVITKSLASE DSYKIVEDSL 600 DIVLGKVENV LKTKHDGHRD KAKDVEILNA CNEGLETQTV LSAPPFQKEE AEHRIRSKSK 660 RKLEDDVSEI SCKSMDDCVL HSYPPRKATK GDFLQQPACI SPRPPLPSPS TVHQFKGFSK 720 PMGNFQERKK QAQDVPVSRR EMETMEMTIM ARMKEMQEGI LRAINETVKS *

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MLQQSKLKID HQISIQAPEL GMEFSSEEDA YKFYKDYAKA TGFSVRKGKY QWSSNGTARK  60
RTFLCSNEGF RLSKTSSSAL RYRRKETRTG CGAMVQITNE TEKWMISRLV LKHNHSLVEG  120
SYTRNRQALE DHWTKRTMGK TRMAQKAGDA ICAKVRNADF SSHLSYLNQC NLNPEDIQGL  180
INYFKQQQLE DPSFFYTLQV DAKSSLISFI WRDGRSKTDY QHFGDVVVLD TTFRVGSEGM  240
ICAPLLGLNH HRQYVLLGCA LLLDESLDSF MWLFGTLMAA MDGLQPKTIL TNECQAMADA  300
IKEVLPDTQH HLGMWYIQQT IEEYLPEPHH QSAFRNLLDK CIFDCQSEEE FDMLWNSLVD  360
QYKLHENERL KTLYMLRKKW SPVFARSTFF AGIQSADGCK AIRTIFQSLM KENMTLLKFA  420
HRYQTVAKEQ RTKEIDDDLC CKKMSPLMIL KGSTLEKQAA DVYTYTIFKL FQDELRGCLS  480
VAIKDMGKTG TVASFKLKEE GQKDNIVKFC DSSNQITCSC KKYESMGILC VHILKVLNAK  540
NVFKLPSQYI LKRWTKSATD GNVLNHQKSL KVKKLMQKAL HVITKSLASE DSYKIVEDSL  600
DIVLGKVENV LKTKHDGHRD KAKDVEILNA CNEGLETQTV LSAPPFQKEE AEHRIRSKSK  660
RKLEDDVSEI SCKSMDDCVL HSYPPRKATK GDFLQQPACI SPRPPLPSPS TVHQFKGFSK  720
PMGNFQERKK QAQDVPVSRR EMETMEMTIM ARMKEMQEGI LRAINETVKS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2977	1e-136	seedling

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48790639	1e-136

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470746.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3
TrEMBL	A0A0D2NYU7	0.0	A0A0D2NYU7_GOSRA; Uncharacterized protein
STRING	Gorai.003G096100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	4e-98	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Gorai.003G096100.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]