PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G096100.1 | ||||||||
Common Name | B456_003G096100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 788aa MW: 89947.3 Da PI: 8.9071 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.7 | 1.1e-24 | 32 | 118 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YAk +GFsvrk k + s ng+ krtf Cs+eg+r +++++ + r +r+etrtgC a++++++e ++kw++++l+l+HnH+l+ Gorai.003G096100.1 32 KFYKDYAKATGFSVRKGKYQWS-SNGTARKRTFLCSNEGFRLSKTSS-SALRYRRKETRTGCGAMVQITNE-TEKWMISRLVLKHNHSLV 118 6****************98887.8888****************9999.99999*****************9.9***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-21 | 32 | 118 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.3E-22 | 226 | 319 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.644 | 495 | 541 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.1E-7 | 512 | 541 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.3E-6 | 516 | 543 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MLQQSKLKID HQISIQAPEL GMEFSSEEDA YKFYKDYAKA TGFSVRKGKY QWSSNGTARK 60 RTFLCSNEGF RLSKTSSSAL RYRRKETRTG CGAMVQITNE TEKWMISRLV LKHNHSLVEG 120 SYTRNRQALE DHWTKRTMGK TRMAQKAGDA ICAKVRNADF SSHLSYLNQC NLNPEDIQGL 180 INYFKQQQLE DPSFFYTLQV DAKSSLISFI WRDGRSKTDY QHFGDVVVLD TTFRVGSEGM 240 ICAPLLGLNH HRQYVLLGCA LLLDESLDSF MWLFGTLMAA MDGLQPKTIL TNECQAMADA 300 IKEVLPDTQH HLGMWYIQQT IEEYLPEPHH QSAFRNLLDK CIFDCQSEEE FDMLWNSLVD 360 QYKLHENERL KTLYMLRKKW SPVFARSTFF AGIQSADGCK AIRTIFQSLM KENMTLLKFA 420 HRYQTVAKEQ RTKEIDDDLC CKKMSPLMIL KGSTLEKQAA DVYTYTIFKL FQDELRGCLS 480 VAIKDMGKTG TVASFKLKEE GQKDNIVKFC DSSNQITCSC KKYESMGILC VHILKVLNAK 540 NVFKLPSQYI LKRWTKSATD GNVLNHQKSL KVKKLMQKAL HVITKSLASE DSYKIVEDSL 600 DIVLGKVENV LKTKHDGHRD KAKDVEILNA CNEGLETQTV LSAPPFQKEE AEHRIRSKSK 660 RKLEDDVSEI SCKSMDDCVL HSYPPRKATK GANNEGARAV SSHSYFAGDF LQQPACISPR 720 PPLPSPSTVH QFKGFSKPMG NFQERKKQAQ DVPVSRREME TMEMTIMARM KEMQEGILRA 780 INETVKS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2977 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48790639 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470744.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
Refseq | XP_012470745.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2 | ||||
TrEMBL | A0A0D2QI36 | 0.0 | A0A0D2QI36_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G096100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19171 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 4e-98 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G096100.1 |
Publications ? help Back to Top | |||
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