PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G094500.2 | ||||||||
Common Name | B456_003G094500, LOC105788391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 28561.8 Da PI: 4.5003 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.4e-20 | 40 | 93 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Gorai.003G094500.2 40 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 93 55689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.3 | 1.3e-40 | 40 | 130 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L + y++lk++ + L ke+++L+ee+ Gorai.003G094500.2 40 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAMYNSLKADYDDLLKEKDKLKEEVL 130 9**************************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.18E-19 | 36 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-20 | 38 | 99 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-17 | 40 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.10E-17 | 40 | 96 | No hit | No description |
PROSITE profile | PS50071 | 16.989 | 40 | 95 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 42 | 102 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.5E-6 | 66 | 75 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 70 | 93 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.5E-6 | 75 | 91 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-13 | 95 | 137 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVSFEDSLKT NRPKRSIFKM FDEQENGYDE YLEECFHQPK KRRLTVDQIQ FLEKSFEVDN 60 KLEPERKIQL AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YDTLLAMYNS LKADYDDLLK 120 EKDKLKEEVL QLTDKLQTKE NERRNSEFSD VKPLLLQEPS QKPIVVSMAA CKQEDIDSDN 180 IPQYYSDEFH SSLLEAADSS YPFEPDQSDL SQDEEDSLHP PASLSNFGFP VEDHPFWSWT 240 Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 95 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470727.1 | 1e-176 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A0D2QI00 | 1e-175 | A0A0D2QI00_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2RJM1 | 1e-175 | A0A0D2RJM1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G094500.1 | 1e-176 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-44 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G094500.2 |
Entrez Gene | 105788391 |
Publications ? help Back to Top | |||
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