PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G094500.1
Common NameB456_003G094500, LOC105788391
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 291aa    MW: 33754.6 Da    PI: 4.619
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G094500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.84.9e-2089142356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Gorai.003G094500.1  89 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 142
                         55689************************************************9 PP
2HD-ZIP_I/II126.89.6e-4189179292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L + y++lk++ + L ke+++L+ee+ 
  Gorai.003G094500.1  89 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAMYNSLKADYDDLLKEKDKLKEEVL 179
                         9**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.0E-2087148IPR001356Homeobox domain
SuperFamilySSF466894.28E-1988152IPR009057Homeodomain-like
CDDcd000867.18E-1889145No hitNo description
PfamPF000462.3E-1789142IPR001356Homeobox domain
PROSITE profilePS5007116.98989144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-2091151IPR009057Homeodomain-like
PRINTSPR000311.1E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5124140IPR000047Helix-turn-helix motif
PfamPF021833.1E-13144186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAGGRVYPSN NDTTDGVPNN LSVLLQNQRL HPLFIPGSSP SPSFLGTRSM VSFEDSLKTN  60
RPKRSIFKMF DEQENGYDEY LEECFHQPKK RRLTVDQIQF LEKSFEVDNK LEPERKIQLA  120
KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY DTLLAMYNSL KADYDDLLKE KDKLKEEVLQ  180
LTDKLQTKEN ERRNSEFSDV KPLLLQEPSQ KPIVVSMAAC KQEDIDSDNI PQYYSDEFHS  240
SLLEAADSSY PFEPDQSDLS QDEEDSLHPP ASLSNFGFPV EDHPFWSWTY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470727.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0D2QI000.0A0A0D2QI00_GOSRA; Uncharacterized protein
STRINGGorai.003G094500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2837133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-43homeobox 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]