PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G062900.1
Common NameB456_003G062900, LOC105788031
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 305aa    MW: 33473 Da    PI: 6.7471
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G062900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.8e-17196230135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Gorai.003G062900.1 196 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 230
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.9E-8318281IPR016679Transcription factor, GATA, plant
SMARTSM004011.8E-16190240IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.426190226IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-14191227IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-15192254No hitNo description
CDDcd002023.32E-13195242No hitNo description
PfamPF003207.1E-15196230IPR000679Zinc finger, GATA-type
PROSITE patternPS003440196221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEAADFFVGG YYGGAAGDGF LPEQKPPENF TVDDLLDFSN EDAIISDYFL DNVAANSTDS  60
STVTTGGDSH FSSANVPHLS QFSGELCVPY DDLAELEWLS NFVEDSFSTD QNLQSNLQIL  120
ATSKSPTPES SSSSTRSDNN PILQHDIPHP AKARSKRSRA PPCDWSTRVL HLIPKSMGQK  180
KRENSNANPE SSGRKCLHCA AEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP  240
TFVSTKHSNS HRKVLELRRQ KDLQRAQHQQ FLSQTSIFGI SDGGGGTDDF LIHHHGVPHF  300
RHMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5913391e-104JX591339.1 Gossypium hirsutum clone NBRI_GE26443 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470166.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO826321e-77GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A0D2QNY40.0A0A0D2QNY4_GOSRA; GATA transcription factor
STRINGGorai.003G062900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-74GATA transcription factor 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]