PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G042700.2 | ||||||||
Common Name | B456_003G042700, LOC105787827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 249aa MW: 27972.1 Da PI: 7.277 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.3 | 7.6e-33 | 48 | 102 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gorai.003G042700.2 48 KPRYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKESE 102 779*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-23 | 50 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.2E-30 | 50 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.2E-30 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.576 | 51 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-31 | 160 | 232 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.16E-19 | 161 | 231 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-26 | 173 | 229 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEFEDQEEQE EEMGLTPSYD SLGNSSRLKM SGVEPGSVTP TGQQQQRKPR YRECLKNHAV 60 GIGGHALDGC GEFMPAGTEG TLDALKCAAC NCHRNFHRKE SELGSPNSIH TTDLYFHHHH 120 HHQPPQFAPY FRAPTGYLHV AGQQRPLALP STSGGGGHSR EDQEDASNQG SSRKRFRTKF 180 TQEQKEKMLS LAERLGWRIQ KHDEEIVQQF CNETGVKRHV LKVWMHNNKH TLALKQSGDM 240 QCNAMQEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 174 | 231 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469839.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 isoform X1 | ||||
Swissprot | Q6YXH5 | 2e-78 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A0D2NW20 | 0.0 | A0A0D2NW20_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G042700.1 | 1e-176 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-70 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G042700.2 |
Entrez Gene | 105787827 |
Publications ? help Back to Top | |||
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