PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G041500.3
Common NameB456_003G041500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 301aa    MW: 34094.4 Da    PI: 4.5549
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G041500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-194598356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Gorai.003G041500.3 45 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 98
                        566899***********************************************9 PP
2HD-ZIP_I/II129.31.5e-4144136193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk++ e+L++++e+L +e+
  Gorai.003G041500.3  44 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKANYEALQHDNEALLKEI 134
                         69*************************************************************************************9999 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Gorai.003G041500.3 135 RE 136
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-1930102IPR009057Homeodomain-like
PROSITE profilePS5007117.34640100IPR001356Homeobox domain
SMARTSM003891.1E-1743104IPR001356Homeobox domain
CDDcd000866.71E-1745101No hitNo description
PfamPF000463.3E-164598IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-2047106IPR009057Homeodomain-like
PRINTSPR000318.2E-67180IPR000047Helix-turn-helix motif
PROSITE patternPS0002707598IPR017970Homeobox, conserved site
PRINTSPR000318.2E-68096IPR000047Helix-turn-helix motif
PfamPF021838.1E-16100140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNDLCFGADE HSPRNNHVYS REFQSMLDGL DEEGCLEESG HVAEKKRRLS VDQVKALEKN  60
FEVENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYGLLK TSYETLKANY  120
EALQHDNEAL LKEIRELQAK HSGESTETES NVSVKEEVIV SENTDNKTLE QSEPAADLNY  180
GSVVLGATLF PDMKDGSSDS DSSAILNEDI ILNTNTNKDN SPNNAAFSSS GVLELDSQHH  240
LLISSSSSPT SSMDCFNFTK TSYQPHQYVK MEEHNFFTAD EACNFFSDPS LHWYSPEQWN  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.28330.0flower|seedling| flowering
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270860.0HQ527086.1 Gossypium herbaceum clone NBRI_D2_391 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469828.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A0D2QN290.0A0A0D2QN29_GOSRA; Uncharacterized protein
STRINGGorai.003G041500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-59homeobox protein 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]