PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G039500.1
Common NameB456_003G039500, LOC105789781
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 307aa    MW: 34523.2 Da    PI: 6.8401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G039500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv+ +++ G g+W++ ++  g++R++k+c++rw +yl
  Gorai.003G039500.1 15 KGPWTPEEDQKLVKFINENGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding54.52.7e-1768113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Gorai.003G039500.1  68 RGKFSHEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8291062IPR017930Myb domain
SuperFamilySSF466893.74E-3112109IPR009057Homeodomain-like
SMARTSM007175.9E-151464IPR001005SANT/Myb domain
PfamPF002497.0E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231669IPR009057Homeodomain-like
CDDcd001672.39E-111762No hitNo description
PROSITE profilePS5129426.4463117IPR017930Myb domain
SMARTSM007171.8E-1667115IPR001005SANT/Myb domain
PfamPF002493.6E-1668113IPR001005SANT/Myb domain
CDDcd001678.01E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2770118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRSPCCDEN TGLKKGPWTP EEDQKLVKFI NENGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSHEEEQTIL NLHSILGNKW SAIASHLPGR TDNEIKNFWN THLKKKLIQM  120
GIDPMTHRPR TDMFSSLPYL IALANLKDLM DQPWEEQALR LKAEAVQMAN LQSLQYLLQL  180
TSVPTSSTST IINTFTDMDA INNLLNPVSI NKDSSNNIAT AAAASLQGFN DSIPFPRLPD  240
LQQVPSTKTN VEKLDNSSMV PNVAETLTHN LGDIACSYKE ADHLSVWPHH DDHHLIFEDP  300
LFHELS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28131175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472593.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z21e-101MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D2NVY90.0A0A0D2NVY9_GOSRA; Uncharacterized protein
STRINGGorai.003G039500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-99myb domain protein 93
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]