PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G035900.4

Common Name

B456_003G035900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 257aa MW: 29112.5 Da PI: 4.6966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G035900.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.2e-09	170	202	6	32
HHHHHHHHHHHHHHHHHHHCTSCC.C....... CS HLH 6 nerErrRRdriNsafeeLrellPk.as.....k 32 ++ErrRR+r+N++++ Lr+++Pk + + Gorai.003G035900.4 170 LMAERRRRKRLNDRLSMLRSIVPKiSKfdverR 202 589********************9553565551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-7	162	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.518	164	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-4	170	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	170	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-7	171	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00468	206	247	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MELSQHGFLE ELMAAAPRRD SWTTFSNGVT EFFPNGWNFE SFDATPPNLA FLGFSTTTTD 60 EIENPSFECP FSDQPYPFGD GFSVSEMDAS TSPFPPAHED YPSMVDDEDQ LGLLTTDHHH 120 QQQHSLEEMK HSCKVEMEQT INNIQGFNMG LFVEKKTKAK RLEGQPSKNL MAERRRRKRL 180 NDRLSMLRSI VPKISKFDVE RRETDTRIDI QCATKPGLLL STVNTLEALG LEIQECVISC 240 FNDFSMQASC SENRGH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	179	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469731.1	1e-172	PREDICTED: transcription factor bHLH93 isoform X2
TrEMBL	A0A0D2RG55	0.0	A0A0D2RG55_GOSRA; Uncharacterized protein
STRING	Gorai.003G035900.1	1e-167	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10570.1	2e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G035900.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]