PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G033400.1
Common NameB456_003G033400, LOC105787708
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26903.5 Da    PI: 9.5174
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G033400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-1993147256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Gorai.003G033400.1  93 RKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTK 147
                         678899***********************************************98 PP
2HD-ZIP_I/II126.31.4e-4093182191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++y++l++en+rL+kev+eL+ +l
  Gorai.003G033400.1  93 RKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELK-AL 182
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.32989149IPR001356Homeobox domain
SuperFamilySSF466892.27E-1891158IPR009057Homeodomain-like
SMARTSM003895.0E-1691153IPR001356Homeobox domain
CDDcd000862.59E-1793150No hitNo description
PfamPF000461.3E-1693147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1793147IPR009057Homeodomain-like
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
SMARTSM003401.5E-22149192IPR003106Leucine zipper, homeobox-associated
PfamPF021835.0E-11149183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGVDDSCNTG LVLSLGFSST LQTPSKPYNK NPSFLKLEPN DEPSLTLALS GVARGVKPAS  60
PLSCVSSFSS GNKPKREREL SSDEDEEGTV NGRKKLRLSK EQSSLLEESF KQHSTLNPKQ  120
KQALARQLNL KPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CYETLTDENR RLQKEVQELK  180
ALKLAAHPFH MQAATLTICP SCERTAASGS VINGDGNSKN LFSLASKTHH LYNNPLTNPS  240
AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834762e-52JX583476.1 Gossypium hirsutum clone NBRI_GE16526 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469684.11e-179PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466046e-82HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2QF321e-178A0A0D2QF32_GOSRA; Uncharacterized protein
STRINGGorai.003G033400.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-58HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]