PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G032100.1

Common Name

B456_003G032100, LOC105787696

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 188aa MW: 21723.3 Da PI: 8.95

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G032100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.6	4.6e-12	79	136	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN++L ++l+ l ++ +k++ Gorai.003G032100.1 79 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRIENRELNNRLKFLLYHCHCVKTD 136 5789**************************************9999888888776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-10	72	127	No hit	No description
SMART	SM00338	4.9E-14	75	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.013	77	126	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.3E-11	79	129	No hit	No description
Pfam	PF00170	2.7E-9	79	136	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.36E-20	80	131	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSFTIPAGFS SDSMVDFDQF TGFETGFTPW DCSELFPPTT QSMEPAGSGS GSDETNQNQT 60 NSSSSLDQPN QLVSVIDERK RRRMISNRES ARRSRMRKQK HLENLRNQVN RLRIENRELN 120 NRLKFLLYHC HCVKTDNDRL RSEYSILRQK LSDIRQILLF KQLQQYSSAW PCYNVATMSD 180 QIPSLTT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	RKRRR
2	78	99	RKRRRMISNRESARRSRMRKQK
3	91	98	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584742	8e-92	JX584742.1 Gossypium hirsutum clone NBRI_GE18127 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469668.1	1e-138	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A0D2QF14	1e-137	A0A0D2QF14_GOSRA; Uncharacterized protein
STRING	Gorai.003G032100.1	1e-137	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	1e-28	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Gorai.003G032100.1
Entrez Gene	105787696

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]