PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G026600.1
Common NameB456_003G026600, LOC105787640
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 317aa    MW: 35046.8 Da    PI: 10.0883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G026600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30247304359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYeg+H h+
  Gorai.003G026600.1 247 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDASMLIVTYEGDHSHS 304
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-13196243IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-32233304IPR003657WRKY domain
PROSITE profilePS5081129.872240306IPR003657WRKY domain
SuperFamilySSF1182904.84E-26242304IPR003657WRKY domain
SMARTSM007742.8E-36245305IPR003657WRKY domain
PfamPF031063.4E-26247303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVLFADMAME LMLSYRNNNN GFSSKMEETA VQEAASGLES VEKLIKLLSQ TQQNYTSNNQ  60
EKKFQSSPTR SSTDLEMDCK VTAHAAVSKF KKVISLLGRT RTGHARFRRA PLPPPPTTTV  120
TEHETKVYQP TPIQQIPLPV TTYLERKDSP TTTINFSYSS TTTTTDNNSN KQPSSSAFQI  180
SNLSSAGKPP LSSSLKRKCS IENLGSGIKC NSSSCRCHCS TKKRKQRTKR VVRVPAISLK  240
MADIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERALDDA SMLIVTYEGD  300
HSHSLSVAET TILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21233305273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384550.0KM438455.1 Gossypium aridum WRKY9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469576.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221764e-89WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0D2RFK30.0A0A0D2RFK3_GOSRA; Uncharacterized protein
STRINGGorai.003G026600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.19e-71WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  4. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]