PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G020200.1

Common Name

B456_003G020200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 192aa MW: 21974.5 Da PI: 6.242

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G020200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.8	6.4e-16	4	83	17	96
E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p +f++eh +k+++ +tl + sg++W +++ +k + +l++GW Fv++n+++ +D++ F+l++++e +++v + Gorai.003G020200.1 4 TIPTEFVREHLMKEHR--SVTLCNYSGKTWIANFKQsqIGKNQYSYLQTGWGTFVRDNNIQFNDVCAFELINSTEISFKVVI 83 7*******878666..59999***9999665444444489**********************987666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	1.4E-7	1	87	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.353	1	87	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.53E-18	4	87	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-17	4	85	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.6E-14	4	85	IPR003340	B3 DNA binding domain
CDD	cd10017	7.24E-17	4	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MEKTIPTEFV REHLMKEHRS VTLCNYSGKT WIANFKQSQI GKNQYSYLQT GWGTFVRDNN 60 IQFNDVCAFE LINSTEISFK VVIYKGQHAN CHQILASEMQ YPYTRENHSQ SDEILEQNIE 120 ESEDDDTTEI LEVISPSLKV REELQSSCPQ SHKMMSSTNS AIKTKTVCNG IKGDKRTKSS 180 YNSTVEDTRK V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472259.1	1e-123	PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBL	A0A0D2RFB0	1e-141	A0A0D2RFB0_GOSRA; Uncharacterized protein
STRING	Gorai.003G020200.1	1e-142	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36330	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	1e-06	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G020200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]