PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G251500.4
Common NameB456_002G251500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 373aa    MW: 41227.4 Da    PI: 6.1852
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G251500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-17148197155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.002G251500.4 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
                         78*******************......55************************998 PP
2AP242.31.8e-13240290155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  Gorai.002G251500.4 240 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIKCNG 290
                         89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-16148207IPR016177DNA-binding domain
PfamPF008472.3E-9148197IPR001471AP2/ERF domain
CDDcd000186.69E-12149207No hitNo description
Gene3DG3DSA:3.30.730.101.3E-17149206IPR001471AP2/ERF domain
SMARTSM003805.5E-33149211IPR001471AP2/ERF domain
PROSITE profilePS5103217.846149205IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17240299IPR016177DNA-binding domain
PfamPF008474.0E-9240290IPR001471AP2/ERF domain
CDDcd000185.93E-26240300No hitNo description
Gene3DG3DSA:3.30.730.106.7E-16241298IPR001471AP2/ERF domain
SMARTSM003803.7E-32241304IPR001471AP2/ERF domain
PROSITE profilePS5103215.527241298IPR001471AP2/ERF domain
PRINTSPR003673.3E-6242253IPR001471AP2/ERF domain
PRINTSPR003673.3E-6280300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVLDLNLTVI SDGDDNSMAG GFSGYNNNQM DSSGGSFGSS VVNADTATTA GDDDSSSNAA  60
ATDTFGYSFD ILKASREEEQ DKYNNRTTIP LFPVDVEGNG WKSTGWLDLA GSGEVAAEQR  120
VVPHQHQQQV QLRQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGTDA DINFNVSDYD DDIKQMSNFT KEEFVHILRR QSTGFSRGSS  240
KYRGVTLHKC GRWEARMGQL LGKKYIYLGL FDSEIEAARA YDKAAIKCNG REAVTNFEPS  300
TYEGELISES ENGDQNRVLD LNLGIAPPCT SNLQKENENS SNFPFQRGYD GLPVASGARV  360
MLITSLKFIS VH*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in developing branch and spikelet meristems at very early stages of inflorescence formation, and is maintained uniformly in the spikelet meristems until floral organs initiation. Present in some floral organ primordia. {ECO:0000269|PubMed:22003982}.
UniprotTISSUE SPECIFICITY: Highly expressed in developing panicles and in young seedlings (PubMed:20017947, PubMed:22003982). Present at low levels at all developmental stages (PubMed:22003982). {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6210203e-77JX621020.1 Gossypium hirsutum clone NBRI_GE67425 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468341.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotB8AMA91e-101AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-101AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0D2RCE50.0A0A0D2RCE5_GOSRA; Uncharacterized protein
STRINGGorai.002G251500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-98related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]