PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G251500.2
Common NameB456_002G251500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 443aa    MW: 48881.9 Da    PI: 6.432
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G251500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-17148197155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.002G251500.2 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
                         78*******************......55************************998 PP
2AP2422.3e-13240290155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  Gorai.002G251500.2 240 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIKCNG 290
                         89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-9148197IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-16148207IPR016177DNA-binding domain
CDDcd000181.24E-11149207No hitNo description
SMARTSM003805.5E-33149211IPR001471AP2/ERF domain
PROSITE profilePS5103217.846149205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17149206IPR001471AP2/ERF domain
PfamPF008475.1E-9240290IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16240299IPR016177DNA-binding domain
CDDcd000181.73E-25240300No hitNo description
SMARTSM003803.7E-32241304IPR001471AP2/ERF domain
PROSITE profilePS5103215.527241298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-16241298IPR001471AP2/ERF domain
PRINTSPR003674.4E-6242253IPR001471AP2/ERF domain
PRINTSPR003674.4E-6280300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVLDLNLTVI SDGDDNSMAG GFSGYNNNQM DSSGGSFGSS VVNADTATTA GDDDSSSNAA  60
ATDTFGYSFD ILKASREEEQ DKYNNRTTIP LFPVDVEGNG WKSTGWLDLA GSGEVAAEQR  120
VVPHQHQQQV QLRQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGTDA DINFNVSDYD DDIKQMSNFT KEEFVHILRR QSTGFSRGSS  240
KYRGVTLHKC GRWEARMGQL LGKKYIYLGL FDSEIEAARA YDKAAIKCNG REAVTNFEPS  300
TYEGELISES ENGDQNRVLD LNLGIAPPCT SNLQKENENS SNFPFQRGYD GLPVASGARE  360
RAIEKRIEVD SPPWQIQGPY GGTKEMPLFP SAASSGFSSS IITSPSAAAG QLRVPNATFL  420
QHHFPPVIMN SNTPHFYCRT ER*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in the boundary region of the shoot apical meristem (SAM) and the surrounding sheath. Expressed at low levels in vegetative organs, mostly in the sheaths. In inflorescence tissues, observed in the branch meristem and spikelet meristem regions, as well as in their vasculature and surrounding sheath (PubMed:17144896). Accumulates in incipient rudimentary- and empty-glume primordia (PubMed:22003982). Highly abundant in young developing panicles, but becomes later present at low levels in developing panicles and seeds. Found primarily in the boundary region of glume primordia (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982}.
UniprotTISSUE SPECIFICITY: Highly expressed in seedlings and developing panicles (PubMed:17144896, PubMed:20017947, PubMed:22003982). Mostly expressed in newly emerging spikelet meristems and, at low levels, in shoots, roots, panicles, mature spikelets and sheaths (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6210204e-77JX621020.1 Gossypium hirsutum clone NBRI_GE67425 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468341.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotQ8H4431e-104AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A0D2QBS20.0A0A0D2QBS2_GOSRA; Uncharacterized protein
STRINGGorai.002G251500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-97related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]