PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G247000.6
Common NameB456_002G247000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 241aa    MW: 27122.6 Da    PI: 4.8087
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G247000.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.99.3e-2010702671
             E2F_TDP 26 tlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                        ++++va+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Gorai.002G247000.6 10 SFSQVADELVAEftdpgnniaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 70
                        5789************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.8E-13170IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094041.3E-997240IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.3E-30876IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.03E-14971IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-161070IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144588.71E-4475178IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.56E-4377190No hitNo description
SMARTSM011387.3E-7377238IPR014889Transcription factor DP, C-terminal
PfamPF087811.7E-4178207IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MPMSISESES FSQVADELVA EFTDPGNNIA SPDQQQYDEK NIRRRVYDAL NVLMAMDIIS  60
KDKKEIQWKG LPRTSLSDIE DLKTERLGLR NRIEKKAAYL HELEEQFVGL QNLIQRNEQL  120
YSSGNPPNGG VALPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DNYVLKAMKF  180
CERPGSDEMA HNFSADGEGS SMSAMYQQQI VPPPMTNTPG RPPTSPPLPG ILKARVKHEH  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-248752893PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468272.11e-172PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_012468273.11e-172PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-111DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D2NSG51e-179A0A0D2NSG5_GOSRA; Uncharacterized protein
STRINGGorai.002G247000.11e-171(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.21e-111Transcription factor DP
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]