PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G246700.1

Common Name

B456_002G246700, LOC105786406

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 263aa MW: 29130.2 Da PI: 8.6463

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G246700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+d ++++G+g +W + +++ g++R++k+c++rw++yl Gorai.002G246700.1 14 KGPWSPEEDAMLKDFIHKHGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39.9	9.7e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+++ +Ed ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ Gorai.002G246700.1 69 GKFSDDEDRIICNLFASIGSR-WSIIAANLP-GRTDNDIKNYWNT 111 89*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.958	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.23E-26	11	109	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-23	15	69	IPR009057	Homeodomain-like
CDD	cd00167	2.66E-9	16	62	No hit	No description
PROSITE profile	PS51294	22.599	63	117	IPR017930	Myb domain
SMART	SM00717	5.5E-12	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-11	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.33E-8	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-23	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MGRAPCCDKS NVKKGPWSPE EDAMLKDFIH KHGTGGNWIS LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGK FSDDEDRIIC NLFASIGSRW SIIAANLPGR TDNDIKNYWN TKLKKKLFGM 120 VPHSYSSSSF SNITTAGSVL QSQQHRGFSA NRLGRNKDSE FGYGGGSGGN HGDQQIGNLE 180 SFFYNEGDKN DHHNLMYSSR DIANGFSSSV GSISSSFDSN FLYGETTSLD YGIERINQQI 240 SSTSSSCEGF GFYQHNANDY PC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	14	117	7	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ115644	0.0	HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468269.1	0.0	PREDICTED: transcription factor RAX2
TrEMBL	A0A0D2RC68	0.0	A0A0D2RC68_GOSRA; Uncharacterized protein
STRING	Gorai.002G246700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-74	myb domain protein 36

Link Out ? help Back to Top
Phytozome	Gorai.002G246700.1
Entrez Gene	105786406

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]