PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G238300.1

Common Name

B456_002G238300, LOC105786326

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 234aa MW: 27292.8 Da PI: 8.4171

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G238300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.6	5.3e-45	4	139	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 +ppGfrF Pt+eelv++yL+kk+e+k+ + +++vi+ vdiy+++PwdLp+ ++++ ++w+fF++r++++a+g r++r t+sgy Gorai.002G238300.1 4 MPPGFRFYPTEEELVSFYLHKKLEAKTdddlnHVMNRVIPVVDIYNFNPWDLPRfsdnLCHKDPEQWFFFIPRQESEARGGRPKRLTSSGY 94 79**********************988876555668**********9546654445677********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 Wkatg+ v+s +++ +g+k+t+vfy+grap+g+ktdW m+ey+ Gorai.002G238300.1 95 WKATGSPGYVYSFNSRPIGVKRTMVFYNGRAPNGKKTDWKMNEYK 139 ******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-48	3	168	IPR003441	NAC domain
PROSITE profile	PS51005	49.07	4	168	IPR003441	NAC domain
Pfam	PF02365	6.2E-23	5	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEDMPPGFRF YPTEEELVSF YLHKKLEAKT DDDLNHVMNR VIPVVDIYNF NPWDLPRFSD 60 NLCHKDPEQW FFFIPRQESE ARGGRPKRLT SSGYWKATGS PGYVYSFNSR PIGVKRTMVF 120 YNGRAPNGKK TDWKMNEYKA IQDHVSLANA TTPPTLRQEF SLCRVYKKSK CLRSFDRRPP 180 GILKIGELFP GLDNNQYINR FTQIGMNDNS STKKDVVDDD EYAFWDVDGF WNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-34	3	168	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-34	3	168	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-34	3	168	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-34	3	168	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-34	3	168	19	168	NAC domain-containing protein 19
3swm_B	6e-34	3	168	19	168	NAC domain-containing protein 19
3swm_C	6e-34	3	168	19	168	NAC domain-containing protein 19
3swm_D	6e-34	3	168	19	168	NAC domain-containing protein 19
3swp_A	6e-34	3	168	19	168	NAC domain-containing protein 19
3swp_B	6e-34	3	168	19	168	NAC domain-containing protein 19
3swp_C	6e-34	3	168	19	168	NAC domain-containing protein 19
3swp_D	6e-34	3	168	19	168	NAC domain-containing protein 19
4dul_A	6e-34	3	168	16	165	NAC domain-containing protein 19
4dul_B	6e-34	3	168	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847247	0.0	KC847247.1 Gossypium hirsutum NAC domain protein NAC70 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314212.1	1e-176	NAC domain-containing protein 90-like
Refseq	XP_012468159.1	1e-176	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	4e-74	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D2NS40	1e-174	A0A0D2NS40_GOSRA; Uncharacterized protein
TrEMBL	W6J901	1e-174	W6J901_GOSHI; NAC domain protein NAC70
STRING	Gorai.002G238300.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-76	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Gorai.002G238300.1
Entrez Gene	105786326

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]